View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_27 (Length: 392)
Name: NF8989_low_27
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 50241895 - 50242232
Alignment:
| Q |
11 |
tttggtgttggaagaaggagttgtcctggaattatacttgcattgccaatattgggattgattattggaaagttggtgtcaaattttgagatgaagggtc |
110 |
Q |
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| T |
50241895 |
tttggtgttggaagaaggagttgtcctggaattatacttgcattgccaatattgggattgattattggaaagttggtgtcaaattttgagatgaagggtc |
50241994 |
T |
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| Q |
111 |
caaatgggacaaagattgatgttagtgaaaaaggtggacaatttagcttgcacattgccaaccactccactgttttgttccatccaattatttagaagca |
210 |
Q |
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| T |
50241995 |
caaatgggacaaagattgatgttagtgaaaaaggtggacaatttagcttgcacattgccaaccactccactgttttgttccatccaattatttagaagca |
50242094 |
T |
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| Q |
211 |
tgaagaataagtctcaagctcccaaatgctttcttacttacaaggatttgtttaa--------tttctttctattttgatttttgcatgtaatgtttcat |
302 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50242095 |
tgaagaataagtctcaagctcccaaatgcttt----cttacaaggatttgtttaatttctttctttctttctattttgatttttgcatgtaatgtttcat |
50242190 |
T |
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| Q |
303 |
cataaaggaactttcaattaagttgttatcactactcaatac |
344 |
Q |
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| T |
50242191 |
cataaaggaactttcaattaagttgttatcactactcaatac |
50242232 |
T |
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