View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_29 (Length: 378)
Name: NF8989_low_29
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 36452091 - 36451741
Alignment:
| Q |
20 |
aggttgccacctccaattggtttacgaccttctttgtagggatttggatccccaacaggtgttgcacggtgatcactgccgtagccattagtaccatcat |
119 |
Q |
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| T |
36452091 |
aggttgccacctccaattggtttacgaccttctttgtagggatttggatccccaacaggtgttgcacggtgatcactgccgtagccattagtaccatcat |
36451992 |
T |
|
| Q |
120 |
atttatcattctttactggactaattccaatcggcctgcgtccatctttgtcaccaccatatccattattatagccatcatcactactcattatgccacc |
219 |
Q |
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| T |
36451991 |
atttatcattctttactggactaattccaatcggcctgcgtccatctttgtcaccaccatatccattattatagccatcatcactactcattatgccacc |
36451892 |
T |
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| Q |
220 |
tccaattggtttacgcccgtctttatgtggacttggatcccctatagctgttgcacgatgagcactaccataaccattaggaccaccaccatatttgcga |
319 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36451891 |
tccaattggtttacgcctgtctttatgtggacttggatcccctatagctgttgcacgatgagcaccaccataaccattaggaccaccaccatatttgcga |
36451792 |
T |
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| Q |
320 |
ttcttaattggactaattccaattggcttgcgtccgtctctgtcaccacca |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36451791 |
ttcttaattggactaattccaattggcttgcgtccgtctctgtcaccacca |
36451741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 36452283 - 36451933
Alignment:
| Q |
20 |
aggttgccacctccaattggtttacgaccttctttgtagggatttggatccccaacaggtgttgcacggtgatcactgccgtagccattagtaccatcat |
119 |
Q |
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| T |
36452283 |
aggttgccacctccaattggtttacggccttcttggtagggatttggatcccccacacttgttgcacgatggtcaccgccaaacccattaggaccatcat |
36452184 |
T |
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| Q |
120 |
atttatcattctttactggactaattccaatcggcctgcgtccatctttgtcaccaccatatcc---attattatagccatcatcactactcatta---t |
213 |
Q |
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| T |
36452183 |
aattgttactcctagttggactaattccaattggcttgtgtc---ctttgtcaccaccgtatccgttatcatgatagccatcatgagtactccttaggtt |
36452087 |
T |
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| Q |
214 |
gccacctccaattggtttacgcccgtctttatgtggacttggatcccctatagctgttgcacgatgagcactaccataaccattaggaccaccaccatat |
313 |
Q |
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||||||||||||||||||||| || ||||| | ||| |||||||||| | || ||||||||| ||| |||| || || ||||||| |||| ||||| |
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| T |
36452086 |
gccacctccaattggtttacgaccttctttgtagggatttggatccccaacaggtgttgcacggtgatcactgccgtagccattag---taccatcatat |
36451990 |
T |
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| Q |
314 |
ttgcgattcttaattggactaattccaattggcttgcgtccgtctctgtcaccacca |
370 |
Q |
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|| |||||| | ||||||||||||||| ||| ||||||| ||| ||||||||||| |
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| T |
36451989 |
ttatcattctttactggactaattccaatcggcctgcgtccatctttgtcaccacca |
36451933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 354
Target Start/End: Complemental strand, 36452468 - 36452141
Alignment:
| Q |
30 |
ctccaattggtttacgaccttctttgtagggatttggatccccaacaggtgttgcacggtgatcactgccgtagccattagtaccatcatatttatcatt |
129 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||| || ||| ||||||||| || |||| | || | ||||| ||||||||| || ||| |
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| T |
36452468 |
ctccgattggtttacgcccttctttgtagggatttggatctcctacacttgttgcacgatggtcaccactataccgattaggaccatcataattgctatt |
36452369 |
T |
|
| Q |
130 |
ctttactggactaattccaatcggcctgcgtccatctttgtcaccaccatatccatt---attatagccatcatcactactcatta---tgccacctcca |
223 |
Q |
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| T |
36452368 |
cccagttggactaattccaactggcttgcgtccttctttgtcaccaccgtatccattatcatgatagccatcatgagtactccttaggttgccacctcca |
36452269 |
T |
|
| Q |
224 |
attggtttacgcccgtctttatgtggacttggatcccctatagctgttgcacgatgagcactaccataaccattaggaccaccaccatatttgcgattct |
323 |
Q |
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||||||||||| || |||| | ||| |||||||||| | | |||||||||||| ||| ||| | |||||||| |||| |||| ||| | || |
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| T |
36452268 |
attggtttacggccttcttggtagggatttggatcccccacacttgttgcacgatggtcaccgccaaacccattagg---accatcataattgttactcc |
36452172 |
T |
|
| Q |
324 |
taattggactaattccaattggcttgcgtcc |
354 |
Q |
| |
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|| ||||||||||||||||||||||| |||| |
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| T |
36452171 |
tagttggactaattccaattggcttgtgtcc |
36452141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 369
Target Start/End: Complemental strand, 36452669 - 36452321
Alignment:
| Q |
30 |
ctccaattggtttacgaccttctttgtagggatttggatccccaacaggtgttgcacggtgatcactgccgtagccattagtaccatcatatttatcatt |
129 |
Q |
| |
|
||||||||||||| || |||||||| || ||||||||||| ||||| | || ||||||||| |||| || || | || || ||||||||| || ||||| |
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| T |
36452669 |
ctccaattggtttgcgtccttctttataaggatttggatctccaacggctgctgcacggtggtcaccaccatacctatgaggaccatcatagttgtcatt |
36452570 |
T |
|
| Q |
130 |
ctttactggact---aattccaatcggcctgcgtccatctttgtcaccaccatatccatta------ttatagccatcatcactactcattatgccacct |
220 |
Q |
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||| | ||| ||||||||| ||| ||||| | ||| |||||||||||||||| ||| || |||||||||| | ||||| ||| || | || |
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| T |
36452569 |
cttaatattacttccaattccaataggcttgcgtacttctgtgtcaccaccatatcctttaccgttattgtagccatcatgagtactctttaggctaact |
36452470 |
T |
|
| Q |
221 |
---ccaattggtttacgcccgtctttatgtggacttggatcccctatagctgttgcacgatgagcactaccataaccattaggaccaccaccatatttgc |
317 |
Q |
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|| |||||||||||||| ||||| | ||| ||||||| |||| | |||||||||||| ||| || ||| | |||||||||| || || |||| |
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| T |
36452469 |
actccgattggtttacgcccttctttgtagggatttggatctcctacacttgttgcacgatggtcaccactataccgattaggaccatca---taattgc |
36452373 |
T |
|
| Q |
318 |
gattcttaattggactaattccaattggcttgcgtccgtctctgtcaccacc |
369 |
Q |
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|||| | ||||||||||||||| |||||||||||| ||| |||||||||| |
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| T |
36452372 |
tattcccagttggactaattccaactggcttgcgtccttctttgtcaccacc |
36452321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 36451898 - 36451738
Alignment:
| Q |
24 |
tgccacctccaattggtttacgaccttctttgtagggatttggatccccaacaggtgttgcacggtgatcactgccgtagccattagtaccatca---ta |
120 |
Q |
| |
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|||||||||||||||||||||| | ||||| | ||| |||||||||| | || ||||||||| ||| ||| || || ||||||| |||| || || |
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| T |
36451898 |
tgccacctccaattggtttacgcctgtctttatgtggacttggatcccctatagctgttgcacgatgagcaccaccataaccattaggaccaccaccata |
36451799 |
T |
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| Q |
121 |
tttatcattctttactggactaattccaatcggcctgcgtccatctttgtcaccaccatat |
181 |
Q |
| |
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||| |||||| | ||||||||||||||| ||| ||||||| ||| |||||||||||||| |
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| T |
36451798 |
tttgcgattcttaattggactaattccaattggcttgcgtccgtctctgtcaccaccatat |
36451738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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