View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_3 (Length: 783)
Name: NF8989_low_3
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 22 - 755
Target Start/End: Original strand, 43637418 - 43638151
Alignment:
| Q |
22 |
ttagtctcttaaattagaaaatattgatcaatttagtctctccatcaaaatattactacagtaatcatccatcgaatcaataaagatatgaatattgact |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43637418 |
ttagtctcttaaattagaaaatattgatcaatttagtctctccatcaaaatattactatagtaatcatccatcgaatcaataaagatatgcatattgact |
43637517 |
T |
|
| Q |
122 |
caaatagtctttcactactgcatctagacaaacatagaatgttcaaaattgttatttcgtaaatttgaaggattgaattaacggaataggtagttttgtg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43637518 |
caaatagtctttcactactgcatctagacaaacatagaatgttcaaaattgttatttcgtaaatttgaaggattgaattaacggaataggtagttttgtg |
43637617 |
T |
|
| Q |
222 |
acttactttgttgaggttccaaattttgagcattgttttgccatcatgtaaagggtctacaaataaagagtctctcgttggaagtgcataatgttgacac |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43637618 |
acttactttgttgaggttccaaattttgagcattgttttgccatcatgtaaagggtctacaaataaagagtctctcgttggaagtgcataatgttgacac |
43637717 |
T |
|
| Q |
322 |
cgcaaaatcgatccatccagcaaaaccagcttcttgagtaacttgaagttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctc |
421 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43637718 |
cgcaaaatcgatccatccggcaaaaccagcttcttgagtaacttgaagttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctc |
43637817 |
T |
|
| Q |
422 |
gagaagcagcatgaaattcagaacaagcatgatgagattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatg |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43637818 |
gagaagcagcatgaaattcagaacaagcatgatgagattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatg |
43637917 |
T |
|
| Q |
522 |
caccatgtgacatccttgcaaccaatatgtaccatttggatccccagctgggtccgtgcaccaaaaatcatcacctgcataaattaatgcatcacaaccc |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43637918 |
caccatgtgacatccttgcaaccaatatgtaccatttggatccccagctgggtccgtgcaccaaaaatcatcacctgcataaattaatgcatcacaaccc |
43638017 |
T |
|
| Q |
622 |
acaactattgataaaccaatgtgacaataacatgtttaatcatttataaaatcgtatggtaaaaatcattttatgataaatgcaattcttaaatagataa |
721 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43638018 |
acaactattgataaaccaatgtgacaataacatgtttaatcatttataaaatcgtatggtaaaaatcattttatgataaatgcaattcttaaatagatag |
43638117 |
T |
|
| Q |
722 |
tcgttaattaagatatatgaagtactaacacagt |
755 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
43638118 |
tcgttaattaagatatattaagtactaacacagt |
43638151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 6e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 218 - 593
Target Start/End: Original strand, 34696860 - 34697235
Alignment:
| Q |
218 |
tgtgacttactttgttgaggttccaaattttgagcattgttttgccatcatgtaaagggtctacaaataaagagtctctcgttggaagtgcataatgttg |
317 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| || | |||| || || ||||| |||||||| |
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| T |
34696860 |
tgtgactcactttgttgagattccaaattttgagcattgtttggccatcatgtaaagggtcttcaaacaagcaatctcgtgtagggagtgcgtaatgttg |
34696959 |
T |
|
| Q |
318 |
acaccgcaaaatcgatccatccagcaaaaccagcttcttgagtaacttgaagttgtggtttccaacagagtcgcttacataaattggtccgccagagatt |
417 |
Q |
| |
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||| ||||| || || ||||| ||||||| || | || || |||||||| ||||| || || ||| | ||||| |||||||||||||| ||||||| |
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| T |
34696960 |
acaacgcaagatagaaccatcaggcaaaacaagagttttaagcaacttgaaattgtgattaccgacacaatcgctaacataaattggtccaccagagaca |
34697059 |
T |
|
| Q |
418 |
gctcgagaagcagcatgaaattcagaacaagcatgatgagattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcac |
517 |
Q |
| |
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|||| ||| |||||||||||||||| ||||| ||| ||||| ||||||||||||||||| || || ||||||||||||||||| ||||||||||||| |
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| T |
34697060 |
gctctagaggcagcatgaaattcagcacaagggtgagtggattgaaacatgtcccaatctgggtgaatgaaatttcccatccataaactgttataggcac |
34697159 |
T |
|
| Q |
518 |
aatgcaccatgtgacatccttgcaaccaatatgtaccatttggatccccagctgggtccgtgcaccaaaaatcatc |
593 |
Q |
| |
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|||| ||||||||||| ||||| | ||||||||||||||||||||| |||| ||| || | ||||| |||||||| |
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| T |
34697160 |
aatgtaccatgtgacaaccttggagccaatatgtaccatttggatcaccagatggatcagaacaccagaaatcatc |
34697235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 370 - 598
Target Start/End: Complemental strand, 489068 - 488840
Alignment:
| Q |
370 |
ttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagattggaacatgt |
469 |
Q |
| |
|
||||| |||||||||| ||| |||| |||||||| || ||||| || |||| |||||| |||||||| ||| ||||| || |||||| ||||| | |
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| T |
489068 |
ttgtgatttccaacagtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatat |
488969 |
T |
|
| Q |
470 |
cccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccatttggatccccagc |
569 |
Q |
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||||||||||||| || |||||||||||||||||||| || || |||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |
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| T |
488968 |
cccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccata |
488869 |
T |
|
| Q |
570 |
tgggtccgtgcaccaaaaatcatcacctg |
598 |
Q |
| |
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|||||| |||||||| ||||||||||||| |
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| T |
488868 |
tgggtcagtgcaccagaaatcatcacctg |
488840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 489215 - 489163
Alignment:
| Q |
223 |
cttactttgttgaggttccaaattttgagcattgttttgccatcatgtaaagg |
275 |
Q |
| |
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||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
489215 |
cttaccttattgaggttccaaattttgagcatagttttgccatcatgtaaagg |
489163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 530
Target Start/End: Original strand, 43562931 - 43563033
Alignment:
| Q |
428 |
cagcatgaaattcagaacaagcatgatgagattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccat |
527 |
Q |
| |
|
|||||||||||| || |||| |||| | ||||||||||||||||||||| ||| | || | | ||||||||||||||| || |||| |||||| | ||| |
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| T |
43562931 |
cagcatgaaatttagcacaaacatggttagattggaacatgtcccaatcaggtcgaatcatttgtcccatccataagctattgtaggaacaatgaatcat |
43563030 |
T |
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| Q |
528 |
gtg |
530 |
Q |
| |
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||| |
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|
| T |
43563031 |
gtg |
43563033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 41513856 - 41513909
Alignment:
| Q |
22 |
ttagtctcttaaattagaaaatattgatcaatttagtctctccatcaaaatatt |
75 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41513856 |
ttagtcccttaaattgaaaaatatcaatcaatttagtctctccatcaaaatatt |
41513909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 530
Target Start/End: Original strand, 36430808 - 36430881
Alignment:
| Q |
457 |
gattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtg |
530 |
Q |
| |
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|||||||||||||||||||| ||||| || | | ||||||||||||||| || |||| |||||| | |||||| |
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| T |
36430808 |
gattggaacatgtcccaatcaggttgaatcatttgtcccatccataagctattgtaggaacaatgaatcatgtg |
36430881 |
T |
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