View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_31 (Length: 376)
Name: NF8989_low_31
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 37269120 - 37268774
Alignment:
| Q |
17 |
aagaaagagttatcaacaagcgtggagaagggagtttctttgtatgagtaatgctatatctagctaattaatatttcgggagacttcatcaagcatctat |
116 |
Q |
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| T |
37269120 |
aagaaagagttatcaacaagcgtggagaagggagtttccttatatgagtaatgctatatctagctaattaatatttcgggagacttcatcaagcatctat |
37269021 |
T |
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| Q |
117 |
tggggttaaacattactcaaaggcaacccaattttatcaacacattttttgtcaccgtgatattagtacgaagtttccactatcgtttaaacatgactaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37269020 |
tggggttaaacattactcaaaggcaacccaattttatcaacacatttt--gtcaccatgatattagtacgaagtttccactatcgtttaaccatgactaa |
37268923 |
T |
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| Q |
217 |
tctttgtcagaaaatctatagaacacataaggtggattctccccttccaaccagattttttccatttgtatgagtcggaagtcaaacctcaaacaaatac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37268922 |
tctttgtcagaaaatctatagaacacataaggtggattctccccttccaaccagattttttccatttgtatgagtcggaagtcaaacctcagacaaatac |
37268823 |
T |
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| Q |
317 |
ataaaaggctaaagtttctcgtcacttgaacaaatctattgttagtatt |
365 |
Q |
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||||||||||||||||| | |||||||||||||||||| |||||||||| |
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| T |
37268822 |
ataaaaggctaaagtttatggtcacttgaacaaatctactgttagtatt |
37268774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 4987948 - 4987908
Alignment:
| Q |
17 |
aagaaagagttatcaacaagcgtggagaagggagtttcttt |
57 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
4987948 |
aagaaagagttagcaacaagcgtggagaagggagtttcttt |
4987908 |
T |
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