View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_36 (Length: 339)
Name: NF8989_low_36
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 33046506 - 33046809
Alignment:
| Q |
20 |
ataagtactagtatttcgcaattcacatggcagcaagtactattttagacggcacagaaacacctctattactgccaacaactcatgataatggaaaaca |
119 |
Q |
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| T |
33046506 |
ataagtactagtatttcacaattcacatggcagcaagtactattttagacggcacagaaacacctctattactgccaacaactcatgataatggaaaaca |
33046605 |
T |
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| Q |
120 |
aaacacaagaccagaaatggagaataaatggtggaacaaaatcttggacatggaggaagccaaacaacaactcatgttttcactaccaatgatttttaca |
219 |
Q |
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| T |
33046606 |
aaacacaagaccagaaatggagaataaatggtggaacaaaatcttggacatagaggaagccaaaattcaactcatgttttcattaccaatgatttttaca |
33046705 |
T |
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| Q |
220 |
aacttattttattacttgattacattggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggttta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33046706 |
aacttattttattacttgattacattggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggttta |
33046805 |
T |
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| Q |
320 |
gtgt |
323 |
Q |
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|||| |
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| T |
33046806 |
gtgt |
33046809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 145 - 323
Target Start/End: Original strand, 33060069 - 33060247
Alignment:
| Q |
145 |
aaatggtggaacaaaatcttggacatggaggaagccaaacaacaactcatgttttcactaccaatgatttttacaaacttattttattacttgattacat |
244 |
Q |
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| T |
33060069 |
aaatggtggaacaaaatcttggacatagaggaagccaaaattcaactcatgttttcattaccaatgatttttacaaacttattttattacttgatcactt |
33060168 |
T |
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| Q |
245 |
tggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggtttagtgt |
323 |
Q |
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| T |
33060169 |
tggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggtttagtgt |
33060247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 133 - 323
Target Start/End: Original strand, 33086205 - 33086395
Alignment:
| Q |
133 |
gaaatggagaataaatggtggaacaaaatcttggacatggaggaagccaaacaacaactcatgttttcactaccaatgatttttacaaacttattttatt |
232 |
Q |
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||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
33086205 |
gaaatggagaagaaatggtggaataaaatcttggacattgaggaagcaaaacatcaactcatgttttcattaccaatgatttttacaaatttattttatt |
33086304 |
T |
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| Q |
233 |
acttgattacattggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggtttagtgt |
323 |
Q |
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| T |
33086305 |
acttgatcactttggtttctgtcatgcttgttggtcatcttggtgaccttcagttagcaggtgctactcttgccaactcatggttcagtgt |
33086395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 133 - 323
Target Start/End: Original strand, 33068180 - 33068370
Alignment:
| Q |
133 |
gaaatggagaataaatggtggaacaaaatcttggacatggaggaagccaaacaacaactcatgttttcactaccaatgatttttacaaacttattttatt |
232 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||||| ||| |||||| |||| |||| |
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| T |
33068180 |
gaaatggagaagaaatggtggaacaaaatcttggacattaaggaagccaaacatcaactcatgtttgcactgccaataattcttacaacaatattatatt |
33068279 |
T |
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| Q |
233 |
acttgattacattggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggtttagtgt |
323 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |||| |
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| T |
33068280 |
actcaattactttggtttctgtcatgcttgttggtcatcttggtgagcttcagttagccggtgctactcttgctaactcgtggtttggtgt |
33068370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 133 - 318
Target Start/End: Original strand, 33076523 - 33076708
Alignment:
| Q |
133 |
gaaatggagaataaatggtggaacaaaatcttggacatggaggaagccaaacaacaactcatgttttcactaccaatgatttttacaaacttattttatt |
232 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||| ||| |||||| ||||| ||| |
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| T |
33076523 |
gaaatggagaagaaatggtggaacaaaatcttggacattaaggaaaccaaacatcaactcatgttttcactgccaataattcttacaacattattatata |
33076622 |
T |
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| Q |
233 |
acttgattacattggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggttt |
318 |
Q |
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| T |
33076623 |
actcaatcactttggtttctgtcatgcttattggtcatctgggtgagcttcagttagctggtgctactcttgctaactcgtggttt |
33076708 |
T |
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