View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_39 (Length: 288)
Name: NF8989_low_39
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_39 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 61 - 288
Target Start/End: Complemental strand, 27430584 - 27430355
Alignment:
| Q |
61 |
ttttacgagtttaattaagcactaacttcactatttgaacacattatcatgttaattattgattttcaaattaattaattttcactatgggaatatatat |
160 |
Q |
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| T |
27430584 |
ttttacgagtttaattaagcacaaacttcactatttgaacaaattatcatgttaattattgattttcaaattaattaattttcactatgggaatatatat |
27430485 |
T |
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| Q |
161 |
ttatttatat--gctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatcca |
258 |
Q |
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| T |
27430484 |
ttatttatatatgctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatcca |
27430385 |
T |
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| Q |
259 |
cctctttacaaaacaacctactatgcccat |
288 |
Q |
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| T |
27430384 |
cctctttacaaaacaacctactatgcccat |
27430355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 27447717 - 27447612
Alignment:
| Q |
173 |
tttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaac |
272 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||| || |
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| T |
27447717 |
tttgcaggaactattacagatgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccaaagaattcaagaggatccacctcttcacaggac |
27447618 |
T |
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| Q |
273 |
aaccta |
278 |
Q |
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| T |
27447617 |
aaccta |
27447612 |
T |
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