View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_41 (Length: 284)
Name: NF8989_low_41
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_41 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 160 - 284
Target Start/End: Original strand, 37268596 - 37268720
Alignment:
| Q |
160 |
aatattataaagaacccaaagaatagctggtgcaaccacaaataacagaagctgagccctagattagacacaggccgattagatattataccatgcacaa |
259 |
Q |
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| T |
37268596 |
aatattataaagaacccaaagaatagctggtgcaaccacaaataacagaagctgagccctagattagacacaggccgattagatattataccatgcacaa |
37268695 |
T |
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| Q |
260 |
tacaaattggaaaatactatgtata |
284 |
Q |
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| T |
37268696 |
tacaaattggaaaatactatgtata |
37268720 |
T |
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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 37268429 - 37268486
Alignment:
| Q |
16 |
agacaacaaaatgatttatatagcattgaaaatatacatgttacaagaaatatgaatg |
73 |
Q |
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| T |
37268429 |
agacaacagaatgatttatatagcattgaaaatatacatgttacaagaaatatgaatg |
37268486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 37272634 - 37272693
Alignment:
| Q |
160 |
aatattataaagaacccaaagaatagctggtgcaaccacaaataacagaagctgagccct |
219 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |
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| T |
37272634 |
aatattataaagaacccaaagaatagctggtgttaccacaaacaacagaagctgacccct |
37272693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 37272477 - 37272532
Alignment:
| Q |
18 |
acaacaaaatgatttatatagcattgaaaatatacatgttacaagaaatatgaatg |
73 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||| | ||||||| |
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| T |
37272477 |
acaacagaatgatttatatagcattaaaaatatacatgttacaagagaaatgaatg |
37272532 |
T |
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