View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_50 (Length: 239)
Name: NF8989_low_50
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 36598961 - 36599169
Alignment:
| Q |
13 |
attatactccttgcacattttgtgcctcctattgtttcatttgaacaaggtaagtgcaaaggttccggcaataatcgtgttcggagactcttctgttgat |
112 |
Q |
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| T |
36598961 |
attatgctccttgcacattttgtgcctcctattgtttcatttgaacaaggtaagtgcaaaggttccggcaataatcgtgttcggagactcttccgttgat |
36599060 |
T |
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| Q |
113 |
gccgggaataacaacttcattccgacggttgcacggagcaattttcagccgtacggacgtgactttcaaggtggaaaagcgaccggaagattctcaaatg |
212 |
Q |
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| T |
36599061 |
gccgggaataacaacttcattccgacggttgcacggagcaattttcagccgtatggacgtgactttcaaggcggaaaagcgaccggaagattctcaaatg |
36599160 |
T |
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| Q |
213 |
ggagaatac |
221 |
Q |
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| T |
36599161 |
ggagaatac |
36599169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 37385684 - 37385570
Alignment:
| Q |
65 |
agtgcaaaggttccggcaataatcgtgttcggagactcttctgttgatgccgggaataacaacttcattccgacggttgcacggagcaattttcagccgt |
164 |
Q |
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| T |
37385684 |
agtgctaaggttccggcgatcatagtgttcggcgactcatccgtggatgccgggaacaacaacttcatatcgacggttgctcggagcaatttccagccgt |
37385585 |
T |
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| Q |
165 |
acggacgtgactttc |
179 |
Q |
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| T |
37385584 |
atggacgtgattttc |
37385570 |
T |
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