View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_56 (Length: 209)
Name: NF8989_low_56
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_56 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 27118335 - 27118493
Alignment:
| Q |
32 |
cgagagcagaggaacggtggttgttacggtgtgtttcactgtgactttcataaattgatgctttttaatcctagctatcgaaattttagttgccacatgt |
131 |
Q |
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| T |
27118335 |
cgagagcagaggaacggtggttgttacagtgtgtttcactgtgactttcataaattgatgctttttaattctaactctcgaaattttaattgccacatgt |
27118434 |
T |
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| Q |
132 |
catccatccgtaaaaagaaccaggtaaatagacaactgcataaatggagtagatatgga |
190 |
Q |
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| T |
27118435 |
catccatccgtaaaaagaactgggtaaacagacagctgcataaatagagtagatctgga |
27118493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 27117870 - 27117757
Alignment:
| Q |
76 |
ctttcataaattgatgctttttaatcctagctatcgaaattttagttgccacatgtcatccatccgtaaaaagaaccaggtaaatagacaactgcataaa |
175 |
Q |
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| T |
27117870 |
ctttcatcaattgatg-tgtttaatcctagctatcggatttttagttgccatgtgtcatccatcggtgaagagaaccgggtaaatggagaactgcataaa |
27117772 |
T |
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| Q |
176 |
tggagtagatatgga |
190 |
Q |
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| T |
27117771 |
ttgagcagatctgga |
27117757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 32239962 - 32240123
Alignment:
| Q |
24 |
aactgatgcgagagcagaggaacggtggttgttacggtgtgtttcactgtgactttcataaattgatgctttttaatcctagctatcgaaattttagttg |
123 |
Q |
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| T |
32239962 |
aactgatgcgagaacagaggaacggttgttgttacagtgtgtttcaacgtgtctttcataaaatgatgttttttaatcctagccatctgatttttagttg |
32240061 |
T |
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| Q |
124 |
ccacatgtcatccatccgtaaaaagaaccaggtaaatagacaactgcataaatggagtagat |
185 |
Q |
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|||| ||||||||||| || || |||||| ||||||| |||| |||||||||||||| |||| |
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| T |
32240062 |
ccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcagat |
32240123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 32239546 - 32239435
Alignment:
| Q |
76 |
ctttcataaattgatgctttttaatcctagctatcgaaattttagttgccacatgtcatccatccgtaaaaagaaccaggtaaatagacaactgcataaa |
175 |
Q |
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||||||| |||||||| | |||||||||||| ||| | ||||||||||||| ||||||||||| || || ||||| |||||| |||| ||||||||| |
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| T |
32239546 |
ctttcatcaattgatg-tgtttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaactgagtaaatggacagctgcataaa |
32239448 |
T |
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| Q |
176 |
tggagtagatatg |
188 |
Q |
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| T |
32239447 |
tggagcagatatg |
32239435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 23011062 - 23010951
Alignment:
| Q |
73 |
tgactttcataaattgatgctttttaatcctagctatcgaaattttagttgccacatgtcatccatccgtaaaaagaaccaggtaaatagacaactgcat |
172 |
Q |
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|||||||||| |||||||| | |||||||||||| ||| | ||||||||||||| ||||||||||| || || |||||||||||||| |||| |||||| |
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| T |
23011062 |
tgactttcatcaattgatg-tgtttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccaggtaaatggacagctgcat |
23010964 |
T |
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| Q |
173 |
aaatggagtagat |
185 |
Q |
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|||||||| |||| |
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| T |
23010963 |
aaatggagcagat |
23010951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 53371891 - 53371999
Alignment:
| Q |
76 |
ctttcataaattgatgctttttaatcctagctatcgaaattttagttgccacatgtcatccatccgtaaaaagaaccaggtaaatagacaactgcataaa |
175 |
Q |
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||||||| |||||||| | |||||||||||| ||| | ||||||||||||| ||||||||||| || || |||||| ||||||| |||| ||||||||| |
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| T |
53371891 |
ctttcatcaattgatg-tgtttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaa |
53371989 |
T |
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| Q |
176 |
tggagtagat |
185 |
Q |
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||||| |||| |
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| T |
53371990 |
tggagcagat |
53371999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 3010 - 3118
Alignment:
| Q |
76 |
ctttcataaattgatgctttttaatcctagctatcgaaattttagttgccacatgtcatccatccgtaaaaagaaccaggtaaatagacaactgcataaa |
175 |
Q |
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||||||| |||||||| | |||||||||| | ||| | ||||||||||||| ||||||||||| || || |||| | ||||||| |||| ||||||||| |
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| T |
3010 |
ctttcatcaattgatg-tgtttaatcctaaccatctgatttttagttgccacgtgtcatccatcagtgaagagaatcgggtaaatggacagctgcataaa |
3108 |
T |
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| Q |
176 |
tggagtagat |
185 |
Q |
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||||| |||| |
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| T |
3109 |
tggagcagat |
3118 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 7266720 - 7266612
Alignment:
| Q |
76 |
ctttcataaattgatgctttttaatcctagctatcgaaattttagttgccacatgtcatccatccgtaaaaagaaccaggtaaatagacaactgcataaa |
175 |
Q |
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|||||||||||||||| |||||||||||||| || || ||||| |||||| | |||| |||| || || |||||| ||||||| || | |||||||| |
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| T |
7266720 |
ctttcataaattgatg-tttttaatcctagccatggagtttttaattgccatgtatcattcatcggtgaagagaaccgggtaaatggatagatgcataaa |
7266622 |
T |
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| Q |
176 |
tggagtagat |
185 |
Q |
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||||| |||| |
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| T |
7266621 |
tggagcagat |
7266612 |
T |
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