View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8989_low_6 (Length: 738)

Name: NF8989_low_6
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8989_low_6
NF8989_low_6
[»] chr6 (9 HSPs)
chr6 (16-178)||(21424844-21425021)
chr6 (241-299)||(21424718-21424776)
chr6 (684-738)||(4349937-4349991)
chr6 (604-728)||(14333857-14333980)
chr6 (687-738)||(4350176-4350227)
chr6 (224-273)||(13360313-13360362)
chr6 (147-178)||(7265635-7265666)
chr6 (665-724)||(24798973-24799034)
chr6 (141-178)||(34447400-34447437)
[»] chr4 (6 HSPs)
chr4 (665-738)||(41668904-41668978)
chr4 (684-738)||(7372636-7372690)
chr4 (699-738)||(21124579-21124618)
chr4 (699-738)||(21144669-21144708)
chr4 (604-738)||(40303526-40303658)
chr4 (604-637)||(39248518-39248551)
[»] chr1 (10 HSPs)
chr1 (686-738)||(5450682-5450734)
chr1 (604-717)||(27663798-27663912)
chr1 (684-736)||(42312897-42312949)
chr1 (684-738)||(6587099-6587154)
chr1 (595-720)||(44061444-44061568)
chr1 (147-178)||(6427336-6427367)
chr1 (684-722)||(34454111-34454150)
chr1 (708-738)||(5450433-5450463)
chr1 (141-178)||(2896163-2896200)
chr1 (225-274)||(32461392-32461441)
[»] chr5 (7 HSPs)
chr5 (604-727)||(36295923-36296045)
chr5 (684-738)||(6419545-6419599)
chr5 (684-738)||(43007748-43007802)
chr5 (595-649)||(3375308-3375362)
chr5 (142-178)||(27144444-27144480)
chr5 (147-178)||(17123034-17123065)
chr5 (595-649)||(3400371-3400425)
[»] chr7 (9 HSPs)
chr7 (692-738)||(30275327-30275373)
chr7 (684-738)||(37808079-37808133)
chr7 (684-738)||(36683952-36684006)
chr7 (665-738)||(20246709-20246784)
chr7 (692-738)||(27746660-27746705)
chr7 (697-738)||(3412168-3412209)
chr7 (684-720)||(10066538-10066574)
chr7 (142-177)||(22484006-22484041)
chr7 (697-738)||(26772623-26772664)
[»] chr3 (6 HSPs)
chr3 (684-738)||(24481356-24481410)
chr3 (685-738)||(43790645-43790698)
chr3 (684-738)||(9107110-9107164)
chr3 (684-726)||(39328368-39328410)
chr3 (141-177)||(11610501-11610537)
chr3 (684-738)||(1543252-1543304)
[»] chr2 (8 HSPs)
chr2 (604-738)||(14902316-14902450)
chr2 (595-637)||(14994619-14994661)
chr2 (665-738)||(24026674-24026748)
chr2 (667-738)||(9373061-9373131)
chr2 (604-655)||(35664440-35664491)
chr2 (665-728)||(6582403-6582467)
chr2 (147-177)||(31018576-31018606)
chr2 (229-274)||(30717458-30717503)
[»] chr8 (5 HSPs)
chr8 (606-738)||(154562-154695)
chr8 (665-734)||(29051746-29051816)
chr8 (704-738)||(32236990-32237024)
chr8 (698-738)||(9315445-9315485)
chr8 (684-734)||(2296668-2296717)
[»] scaffold0380 (1 HSPs)
scaffold0380 (225-273)||(8672-8720)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 4e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 21425021 - 21424844
Alignment:
Q  16 catgcagcacacccaatttgactggccaaatcagcataacagaccaatacaacaaaacaaatcaaataacgttataaaagacaaaggaaagcac------ 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||          
T  21425021 catgcagcacacccaatttgactggccaaatcagcataacagaccaatacaacaaaacaaaccaaataacgttataaaagacaaaggaaagcaccaacag 21424922  T
Q  110 --------gtccaagatcaac-atcctcaatgccctatgaaacacagacactgacacgccaacaccgctaataatttg 178  Q
             |||||||||||| ||||  ||| |||||||||||||| | |||||||||||||||||||||||||||||    
T  21424921 ctctacaaatccaagatcaactatcccaaataccctatgaaacacataaactgacacgccaacaccgctaataatttg 21424844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 21424776 - 21424718
Alignment:
Q  241 acggctaatccaaaaagtgtccgtgcttcatagccaaaaccaaacacaattgagataaa 299  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||    
T  21424776 acggctaatctgagaagtgtccgtgcttcatagccaaaaccaaacacaattgagataaa 21424718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 4349991 - 4349937
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  4349991 aaaaattgcttaattctttgtatcaagtttgatgtttatatatatttactagtta 4349937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 604 - 728
Target Start/End: Original strand, 14333857 - 14333980
Alignment:
Q  604 agggcgaccgccctaggccctaaaaaataagtacggaatgtgggcctcaaattcnnnnnnnaggggtctattaggtc-tataaaaa-ttgcttagttttt 701  Q
    ||||||||||||| | |||| |||||||||||||| ||| |||||| ||| ||        |||||||||||||| | || ||||| ||| |||||||||    
T  14333857 agggcgaccgcccaaagcccaaaaaaataagtacgaaatttgggccccaattt---tttttaggggtctattaggccctaaaaaaagttgattagttttt 14333953  T
Q  702 tgtatcaagtttgatgtttatatatat 728  Q
    |||||||||||||||||||||||||||    
T  14333954 tgtatcaagtttgatgtttatatatat 14333980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 687 - 738
Target Start/End: Complemental strand, 4350227 - 4350176
Alignment:
Q  687 aattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  4350227 aattgcttaattctttgtatcaagtttgatgtttatatatatttactagtta 4350176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 13360362 - 13360313
Alignment:
Q  224 atgtccgacactgagatacggctaatccaaaaagtgtccgtgcttcatag 273  Q
    |||||||||||||||| ||| ||||||| || ||||||||||||||||||    
T  13360362 atgtccgacactgagacacgcctaatccgaagagtgtccgtgcttcatag 13360313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 178
Target Start/End: Complemental strand, 7265666 - 7265635
Alignment:
Q  147 gacactgacacgccaacaccgctaataatttg 178  Q
    ||||||||||||||||||||||||||||||||    
T  7265666 gacactgacacgccaacaccgctaataatttg 7265635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 724
Target Start/End: Complemental strand, 24799034 - 24798973
Alignment:
Q  665 aggggtctattaggtc-tataaaaattgcttagtttttt-gtatcaagtttgatgtttatat 724  Q
    |||||||||||||| | || |||||||| |||||||||| ||||||||| ||||||||||||    
T  24799034 aggggtctattaggccctaaaaaaattggttagtttttttgtatcaagtatgatgtttatat 24798973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 34447437 - 34447400
Alignment:
Q  141 aacacagacactgacacgccaacaccgctaataatttg 178  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  34447437 aacacagacaatgacacgccaacaccgttaataatttg 34447400  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 665 - 738
Target Start/End: Complemental strand, 41668978 - 41668904
Alignment:
Q  665 aggggtctattaggtc-tataaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41668978 aggggtctattaggccctaaaaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 41668904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 7372636 - 7372690
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7372636 aaaaattgcttagttttttgtatcaaatttgatgtttatatatatttattagtta 7372690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 699 - 738
Target Start/End: Original strand, 21124579 - 21124618
Alignment:
Q  699 ttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  21124579 ttttatatcaagtttgatgtttatatatatttattagtta 21124618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 699 - 738
Target Start/End: Original strand, 21144669 - 21144708
Alignment:
Q  699 ttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  21144669 ttttatatcaagtttgatgtttatatatatttattagtta 21144708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 738
Target Start/End: Complemental strand, 40303658 - 40303526
Alignment:
Q  604 agggcgaccgccctaggccctaaaaaataagtacggaatgtgggcctcaaattcnnnnnnnaggggtctattaggtctataaaaattgcttagttttttg 703  Q
    ||||||||||||||| | |  |||||||||||||| ||| |||| ||||||||        |||||||||||||  |   |||||||||||   ||||||    
T  40303658 agggcgaccgccctaagtctcaaaaaataagtacgaaatttgggtctcaaatt--ttttttaggggtctattagaccgtaaaaaattgctttactttttg 40303561  T
Q  704 tatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||||||  | |||||||||||||||||||||    
T  40303560 tatcaagtttcgtttttatatatatttattagtta 40303526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 637
Target Start/End: Complemental strand, 39248551 - 39248518
Alignment:
Q  604 agggcgaccgccctaggccctaaaaaataagtac 637  Q
    |||||||||||||||||||| |||||||||||||    
T  39248551 agggcgaccgccctaggcccaaaaaaataagtac 39248518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 686 - 738
Target Start/End: Complemental strand, 5450734 - 5450682
Alignment:
Q  686 aaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5450734 aaattgcttagttctttgtatcaagtttgatgtttatatatatttattagtta 5450682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 604 - 717
Target Start/End: Original strand, 27663798 - 27663912
Alignment:
Q  604 agggcgaccgccctaggccctaaaaaataagtacggaatgtgggcctcaaattcnnnnnnnaggggtctattagg-tctataaaaattgcttagtttttt 702  Q
    ||||||||||| |||||||| |||||||||||||| ||| |||||| | ||||        ||||||||||||||  ||| |||| ||||||| ||||||    
T  27663798 agggcgaccgcgctaggcccaaaaaaataagtacgaaatttgggcccccaatttttttaataggggtctattaggccctaaaaaagttgcttattttttt 27663897  T
Q  703 gtatcaagtttgatg 717  Q
    | |||||||||||||    
T  27663898 gaatcaagtttgatg 27663912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 684 - 736
Target Start/End: Original strand, 42312897 - 42312949
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagt 736  Q
    |||||||| ||||||||||| ||||  ||||||||||||||||||||||||||    
T  42312897 aaaaattgtttagttttttgaatcagatttgatgtttatatatatttattagt 42312949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 6587099 - 6587154
Alignment:
Q  684 aaaaattgcttagttttttgt-atcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||    
T  6587099 aaaaattgctttgtttttttttatcaagtttgatgtttatatagatttattagtta 6587154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 720
Target Start/End: Complemental strand, 44061568 - 44061444
Alignment:
Q  595 atctgaggcagggcgaccgccctaggccctaaaaaataagtacggaatgtgggcctcaaattcnnnnnnnaggggtctattaggtctataaaaa-ttgct 693  Q
    |||||||||| ||||||||||||| |||| |||||||||||||  ||| |||||| | ||||         ||||||||||| | |  |||||| |||||    
T  44061568 atctgaggcaaggcgaccgccctaagccccaaaaaataagtacaaaatttgggcccccaatt--tttttttggggtctattaagcccttaaaaagttgct 44061471  T
Q  694 tagttttttgtatcaagtttgatgttt 720  Q
    |||| ||||||||||||||||||||||    
T  44061470 tagtattttgtatcaagtttgatgttt 44061444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 6427336 - 6427367
Alignment:
Q  147 gacactgacacgccaacaccgctaataatttg 178  Q
    ||||||||||||||||||||||||||||||||    
T  6427336 gacactgacacgccaacaccgctaataatttg 6427367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 722
Target Start/End: Original strand, 34454111 - 34454150
Alignment:
Q  684 aaaaattgcttagtttt-ttgtatcaagtttgatgtttat 722  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  34454111 aaaaattgcttagtttttttgtatcaagtttgatgtttat 34454150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 708 - 738
Target Start/End: Complemental strand, 5450463 - 5450433
Alignment:
Q  708 aagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||||||||||||||||||||||    
T  5450463 aagtttgatgtttatatatatttattagtta 5450433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 2896200 - 2896163
Alignment:
Q  141 aacacagacactgacacgccaacaccgctaataatttg 178  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  2896200 aacacggacactgacacgccgacaccgctaataatttg 2896163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 32461441 - 32461392
Alignment:
Q  225 tgtccgacactgagatacggctaatccaaaaagtgtccgtgcttcatagc 274  Q
    |||| ||||||| || ||| ||||||||| ||||||||||||||||||||    
T  32461441 tgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatagc 32461392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 604 - 727
Target Start/End: Original strand, 36295923 - 36296045
Alignment:
Q  604 agggcgaccgccctaggccctaaaaaataagtacggaatgtgggcctcaaattcnnnnnnnaggggtctattaggtc-tataaaaattgcttagtttttt 702  Q
    ||||||||||||||||| || ||||||||||||   ||| ||| |||||||||        ||| |||||||||||| || ||||||| |||||||||||    
T  36295923 agggcgaccgccctaggtcccaaaaaataagtataaaatttggtcctcaaatt--ttttttaggagtctattaggtcctaaaaaaattacttagtttttt 36296020  T
Q  703 gtatcaagtttgatgtttatatata 727  Q
    |||||||||||||||||||||||||    
T  36296021 gtatcaagtttgatgtttatatata 36296045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 6419599 - 6419545
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  6419599 aaaaattacttagatttttatatcaagtttgatgtttatatatatttattagtta 6419545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 43007748 - 43007802
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  43007748 aaaaattgcttagttttttgtatcaaacttgatgtttatatataattattagtta 43007802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 649
Target Start/End: Original strand, 3375308 - 3375362
Alignment:
Q  595 atctgaggcagggcgaccgccctaggccctaaaaaataagtacggaatgtgggcc 649  Q
    |||| |||||||||||||| ||||||||| |||||||||||||| ||| ||||||    
T  3375308 atcttaggcagggcgaccgtcctaggccccaaaaaataagtacgaaatttgggcc 3375362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 27144444 - 27144480
Alignment:
Q  142 acacagacactgacacgccaacaccgctaataatttg 178  Q
    ||||||||||||||||||| |||||||||||||||||    
T  27144444 acacagacactgacacgccgacaccgctaataatttg 27144480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 17123034 - 17123065
Alignment:
Q  147 gacactgacacgccaacaccgctaataatttg 178  Q
    ||||||||||||||||||||||||||||||||    
T  17123034 gacactgacacgccaacaccgctaataatttg 17123065  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 595 - 649
Target Start/End: Original strand, 3400371 - 3400425
Alignment:
Q  595 atctgaggcagggcgaccgccctaggccctaaaaaataagtacggaatgtgggcc 649  Q
    |||| |||||||||||||  ||||||||| |||||||||||||| ||| ||||||    
T  3400371 atcttaggcagggcgaccatcctaggccccaaaaaataagtacgaaatttgggcc 3400425  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 738
Target Start/End: Complemental strand, 30275373 - 30275327
Alignment:
Q  692 cttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30275373 cttagttttttgtatcaagtttgatgtttatatatatttattagtta 30275327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 37808133 - 37808079
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  37808133 aaaaattgcttagttttttatatgaagttttatgtttatatatatttattagtta 37808079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 36684006 - 36683952
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||  |||||||||||||||||||||||| |||||||| ||||||||||||    
T  36684006 aaaaattatttagttttttgtatcaagtttgatatttatataaatttattagtta 36683952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 738
Target Start/End: Complemental strand, 20246784 - 20246709
Alignment:
Q  665 aggggtctattaggtct--ataaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||||||||| |||  | |||||||||||  |||||| |||||| |||||||||||||||| |||||||||||    
T  20246784 aggggtctattagatcttaaaaaaaattgctttattttttatatcaaatttgatgtttatatatgtttattagtta 20246709  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 738
Target Start/End: Complemental strand, 27746705 - 27746660
Alignment:
Q  692 cttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  27746705 cttagttctttgtatca-gtttgatgtttatatatatttattagtta 27746660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 738
Target Start/End: Complemental strand, 3412209 - 3412168
Alignment:
Q  697 ttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  3412209 ttttttgtatcaggtttgatgtttatatatatttatttgtta 3412168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 684 - 720
Target Start/End: Original strand, 10066538 - 10066574
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgttt 720  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10066538 aaaagttgcttagttttttgtatcaagtttgatgttt 10066574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 22484006 - 22484041
Alignment:
Q  142 acacagacactgacacgccaacaccgctaataattt 177  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22484006 acacagacactgacacgccgacaccgctaataattt 22484041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 738
Target Start/End: Complemental strand, 26772664 - 26772623
Alignment:
Q  697 ttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||| ||| || ||||||||||||||||||||||||||||    
T  26772664 ttttttatataaaatttgatgtttatatatatttattagtta 26772623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 24481410 - 24481356
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  24481410 aaaaattgcttagttttttttatcaagtttgatgtttatatatatttactagtta 24481356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 685 - 738
Target Start/End: Original strand, 43790645 - 43790698
Alignment:
Q  685 aaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43790645 aaaattgtttagttttttgtatcaaatttgatgtttatatatatttattagtta 43790698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 9107164 - 9107110
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||    
T  9107164 aaaagttgtttagttttttgtatcgaatttgatgtttatatatatttattagtta 9107110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 726
Target Start/End: Original strand, 39328368 - 39328410
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatat 726  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  39328368 aaaaattgcttagttttttgtatcaagtttgatgtatatatat 39328410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 11610501 - 11610537
Alignment:
Q  141 aacacagacactgacacgccaacaccgctaataattt 177  Q
    |||||||| ||||||||||||||||||||||||||||    
T  11610501 aacacagatactgacacgccaacaccgctaataattt 11610537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 1543304 - 1543252
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||||||||||  ||||| ||| |||||| |||||||||||||||||    
T  1543304 aaaaattgcttagtttttt--atcaaatttaatgtttttatatatttattagtta 1543252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 604 - 738
Target Start/End: Complemental strand, 14902450 - 14902316
Alignment:
Q  604 agggcgaccgccctaggccctaaaaaataagtacggaatgtgggcctcaaattcnnnnnnnaggggtctattaggtc-tataaaaattgcttagtttttt 702  Q
    ||||||||||||||||| || ||||||||| ||||  || |||||  ||||||        |||||||||||||  | ||  |||||||||||||||||     
T  14902450 agggcgaccgccctaggtcccaaaaaataattacgatatttgggctccaaatttttcttttaggggtctattagaccctaacaaaattgcttagttttt- 14902352  T
Q  703 gtatcaagtttgatgtttatatatatttattagtta 738  Q
    ||||||| ||||||||||||||||||||||||||||    
T  14902351 gtatcaaatttgatgtttatatatatttattagtta 14902316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 14994619 - 14994661
Alignment:
Q  595 atctgaggcagggcgaccgccctaggccctaaaaaataagtac 637  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  14994619 atctgaggcagggcgaccgccctaggcccgaaaaaataagtac 14994661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 738
Target Start/End: Original strand, 24026674 - 24026748
Alignment:
Q  665 aggggtctattaggtc-tataaaaattgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||||| | || ||||||| ||||| ||||| |||||| ||| ||||||||||||||||||||||||    
T  24026674 aggggtctattaggccctaaaaaaattacttagctttttatatcaaatttaatgtttatatatatttattagtta 24026748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 667 - 738
Target Start/End: Complemental strand, 9373131 - 9373061
Alignment:
Q  667 gggtctattaggtctataaaaa-ttgcttagttttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||  ||| ||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  9373131 gggtctattagacctaaaaaaagttgtttagttttttgtatcaagtttgatgtttat--atatttattagtta 9373061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 604 - 655
Target Start/End: Original strand, 35664440 - 35664491
Alignment:
Q  604 agggcgaccgccctaggccctaaaaaataagtacggaatgtgggcctcaaat 655  Q
    ||||||||||||||||||||||||||||||||||  ||| || |||||||||    
T  35664440 agggcgaccgccctaggccctaaaaaataagtacaaaatttgagcctcaaat 35664491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 665 - 728
Target Start/End: Original strand, 6582403 - 6582467
Alignment:
Q  665 aggggtctattaggtct--ataaaaattgcttagttttttgtatcaagtttgatgtttatatatat 728  Q
    ||||||||||||||||   | ||||||||||||||| |||| || |||||||||||||||||||||    
T  6582403 aggggtctattaggtcctaaaaaaaattgcttagttctttgcat-aagtttgatgtttatatatat 6582467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 177
Target Start/End: Original strand, 31018576 - 31018606
Alignment:
Q  147 gacactgacacgccaacaccgctaataattt 177  Q
    |||||||||||||||||||||||||||||||    
T  31018576 gacactgacacgccaacaccgctaataattt 31018606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 30717503 - 30717458
Alignment:
Q  229 cgacactgagatacggctaatccaaaaagtgtccgtgcttcatagc 274  Q
    |||||||| |||||| |||||||||  |||||||||||||||||||    
T  30717503 cgacactgggatacgcctaatccaaggagtgtccgtgcttcatagc 30717458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 606 - 738
Target Start/End: Original strand, 154562 - 154695
Alignment:
Q  606 ggcgaccgccctaggccctaaaaaataagtacggaatgtgggcctcaaattcnnnnnnnaggggtctattaggtc-tataaaaattgcttagttttttgt 704  Q
    |||||| ||| || |||| |||||||||||||| ||| ||||||||||| |        |||| ||||||||  | || |||||||| |||||||||||     
T  154562 ggcgactgccgtatgccccaaaaaataagtacgaaatttgggcctcaaaatttctttttagggatctattagaccctaaaaaaattgtttagttttttga 154661  T
Q  705 atcaagtttgatgtttatatatatttattagtta 738  Q
    |||| |||||||| ||||||||||||||||||||    
T  154662 atcaggtttgatgattatatatatttattagtta 154695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 734
Target Start/End: Complemental strand, 29051816 - 29051746
Alignment:
Q  665 aggggtctattagg-tctataaaaattgcttagttttttgtatcaagtttgatgtttatatatatttatta 734  Q
    |||||||||||||  |||| ||||||| ||||||||||||||||||  || ||||||||||||||||||||    
T  29051816 aggggtctattagactctacaaaaattacttagttttttgtatcaaacttaatgtttatatatatttatta 29051746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 704 - 738
Target Start/End: Original strand, 32236990 - 32237024
Alignment:
Q  704 tatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||||||||||||||||||||||||||    
T  32236990 tatcaagtttgatgtttatatatatttattagtta 32237024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 698 - 738
Target Start/End: Complemental strand, 9315485 - 9315445
Alignment:
Q  698 tttttgtatcaagtttgatgtttatatatatttattagtta 738  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  9315485 tttttgtatcaaatttaatgtttatatatatttattagtta 9315445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 684 - 734
Target Start/End: Original strand, 2296668 - 2296717
Alignment:
Q  684 aaaaattgcttagttttttgtatcaagtttgatgtttatatatatttatta 734  Q
    |||||||||| | |||||| |||||| ||||||||||||||||||||||||    
T  2296668 aaaaattgctca-ttttttatatcaaatttgatgtttatatatatttatta 2296717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 8672 - 8720
Alignment:
Q  225 tgtccgacactgagatacggctaatccaaaaagtgtccgtgcttcatag 273  Q
    |||||||||||| |||||| |||||||||  ||||||||||||||||||    
T  8672 tgtccgacactgggatacgcctaatccaaggagtgtccgtgcttcatag 8720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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