View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_7 (Length: 703)
Name: NF8989_low_7
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 686
Target Start/End: Original strand, 37194659 - 37195336
Alignment:
| Q |
12 |
gattatactcgtaaaatgttgacggatctgacttaacttcagtctcccaaaatctatctaagctgaagatattctcaccnnnnnnnnnnnnnnnnnnggg |
111 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||||| |||||| ||||||||||||||| ||||||||||||||| ||| |
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| T |
37194659 |
gattatactcgtaaaatgttgacggacccgacttaacttaagtctcgcaaaatctatctaagtcgaagatattctcacctctttttttt--------ggg |
37194750 |
T |
|
| Q |
112 |
tcaaacagcgtagtggctaaaattcactttataagatgaataaatatggtattatgagatcgaaccccgaccctgcatataacaatgcattattctaaat |
211 |
Q |
| |
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|||||||||||||| ||||||||||| | |||||||||| | |||| |||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
37194751 |
tcaaacagcgtagttgctaaaattca--------ggtgaataaataggatattctgagatcgaaccccgaccctgccgataagaatgcattattctaaat |
37194842 |
T |
|
| Q |
212 |
caatgtattgtcctaccaacgg---atatatagagagtatgcatgttctctgaatcaacgctcgattacactacctaaaataattaaaatcgcgccataa |
308 |
Q |
| |
|
||||| |||||||||||||| | | ||| | || | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37194843 |
caatgcattgtcctaccaactataaacagatatacaggagacatgttctctaaatcaacgctcgattacactacctaaaataattaaaatcgcgccatta |
37194942 |
T |
|
| Q |
309 |
ttagttatcactgcaaacattnnnnnnn-tctacaccttaaactttccactatgtcgatgtccatgtctattatccacaaccttaannnnnnnnnnnnnn |
407 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194943 |
ttagttatcactgcaaacattaaaaaaaatctacaccttaaactttccactatgtcgatgtccatgtctattatccacaaccttaaacccaccaccacca |
37195042 |
T |
|
| Q |
408 |
nnnnnttactctccccctccatttcttcaccattcccattaccatc------------atcatcttttaaaccacccatcttttgctccaatccttcaaa |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195043 |
ccaccttactctccccctccatttcttcaccattcccattaccatcatcatcatcatcatcatcttttaaaccacccatcttttgctccaatccttcaaa |
37195142 |
T |
|
| Q |
496 |
tctctctcgaagactcttccttccttctgtttcgggtatctgggacgccatcaccggcggcagcggcaataacaacaccaatgaagcccttctcgcaatt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195143 |
tctctctcgaagactcttccttccttctgtttccggtatctgggacgccatcaccggcggcagcggcaataacaacaccaatgaagcccttctcgcaatt |
37195242 |
T |
|
| Q |
596 |
cgacgcggaatgtctctcttcagacaggtacacaacgtttcttttcaatatctttaatggtgagttgtaac---taactagtactcattgttta |
686 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37195243 |
cgacgcggaatgtctctcttcagacaggtacacaacgtttcttttcaatatctttaatggtgagttgtaactagtaactagtactcattgttta |
37195336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 22043131 - 22043097
Alignment:
| Q |
122 |
tagtggctaaaattcactttataagatgaataaat |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
22043131 |
tagtggctaaaattcactttataagatgaataaat |
22043097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 27907885 - 27907917
Alignment:
| Q |
122 |
tagtggctaaaattcactttataagatgaataa |
154 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
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|
| T |
27907885 |
tagtggctaaaattcaccttataagatgaataa |
27907917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 42553179 - 42553209
Alignment:
| Q |
171 |
tcgaaccccgaccctgcatataacaatgcat |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
42553179 |
tcgaaccccgaccctgcatataacaatgcat |
42553209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 6652315 - 6652235
Alignment:
| Q |
122 |
tagtggctaaaattcactttataagatgaataaatatggtattatgagatcgaaccccgaccctgcatataacaatgcatt |
202 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||| ||| | ||| |||||||| |||||||||| || |||||||| |
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|
| T |
6652315 |
tagtggctataattcactttataaggtgaataaatggggtgtctggagttcgaaccctaaccctgcataaaataatgcatt |
6652235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 34365841 - 34365809
Alignment:
| Q |
122 |
tagtggctaaaattcactttataagatgaataa |
154 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
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|
| T |
34365841 |
tagtggctagaattcactttataagatgaataa |
34365809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 21476070 - 21476102
Alignment:
| Q |
122 |
tagtggctaaaattcactttataagatgaataa |
154 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
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|
| T |
21476070 |
tagtggctagaattcactttataagatgaataa |
21476102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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