View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_9 (Length: 609)
Name: NF8989_low_9
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 19 - 609
Target Start/End: Original strand, 28891215 - 28891804
Alignment:
| Q |
19 |
gtgttgatgctgcttaacctctaataatttaacaagtggattatacaatccatgtcactcataaaccttgttaactccatttagaagcttttgtgaaaaa |
118 |
Q |
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| T |
28891215 |
gtgttgatgctgcttaacctctaataatttaacaagtggattatacaatccatgtcactgataaaccttgttaactccatttagaagcttttgtgaaaaa |
28891314 |
T |
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| Q |
119 |
caacctgaatcatggataaaaacctgtcaaaattgaaaactttcccaaaatatcctaaattttcctccgaatatcctctcaaggaaagaaaacaacgaca |
218 |
Q |
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| T |
28891315 |
caacctgaatcatggataaaaacctgtcaaaattgaaaactttcccaaaatatcctaaattttcctccgaatatcctctcaaggaaagaaaacaacgaca |
28891414 |
T |
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| Q |
219 |
actttattctctttcacgtttccttttgacaacgtaagcacatgttctttttcccgcttgttgggtcccacttgaatcttctcttccactgtttgtctca |
318 |
Q |
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| T |
28891415 |
actttattctctttcacgtttccttttgacaacgtaagcacatgttctttttcccgcttgttgggtcccacttgaatcttctcttccactgtttgtctca |
28891514 |
T |
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| Q |
319 |
ctctcacatcagatctcatccagtttgtgttatataaaccccattcaaggatacatctcttcatccttctcctcccaggtaacttctacctttcaattct |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28891515 |
ctctcacatcagatctcatccagtttgtgttatataaaccccattcaaggatacatctcttcatccttctcctcccaggtaacttttacctttcaattct |
28891614 |
T |
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| Q |
419 |
acttcttcatttgcaaagtttcaaccttttcaccaattttatctcnnnnnnnatcataaaataacttgggtcatttttattttctcatgggtgtcttcaa |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28891615 |
acttcttcatttgcaaagtttcaaccttttcaccaattttatctc-ttttttatcataaaataacttgggtcatttttattttctcatgggtgtcttcaa |
28891713 |
T |
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| Q |
519 |
attttcaaatttgatctcttgtgtaatctatggaactgttcactctgtttttgacactccattagtgttcattgcttagttgcttgcaatt |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28891714 |
attttcaaatttgatctcttgtgtaatctatggaactgttcactctgtttttgacactccattagtgttcattgcttagttgcttgcaatt |
28891804 |
T |
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