View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8990_high_11 (Length: 215)
Name: NF8990_high_11
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 34237600 - 34237418
Alignment:
| Q |
18 |
ggtaatgccttattttttcctaaagaaaacggttactagcttgtgcatattaatat------gaatttagtggccatgctatagtgcgtattcacacacc |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34237600 |
ggtaatggcttattttttcctaaagaaaacggttactagcttgtgcatattaatattaatatgaatttagtggccatgctatagtgcctattcacacacc |
34237501 |
T |
|
| Q |
112 |
tatccaatcctttcaactttcttaaaatcattttactcctcatgagnnnnnnnggatttcatcttcc-tgattatatattcctcttgtc |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34237500 |
t-----atcctttcaactttcttaaaatcattttactcctcatgag-ttttttggatttcatcttccttgattatatattcctcttgtc |
34237418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University