View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8990_low_10 (Length: 391)
Name: NF8990_low_10
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 79 - 379
Target Start/End: Complemental strand, 7702440 - 7702127
Alignment:
| Q |
79 |
catgtgttactagatgtcaattatgttgttg------atctgttcattatccaaattgcgtgtttctcttcttgttttacttccggcttatttgcaatag |
172 |
Q |
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| T |
7702440 |
catgtgttactagatgtcaattatgttgtagtactggatctgttcattatccaaattgcgtgtttctcttcttgttttacttccggcttatttgcaatag |
7702341 |
T |
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| Q |
173 |
taaaataacttcgagatcatttagttattgaacagaattattatcatattaactgtagtttgattttatatgcttcgtctgcatttcccc---taaaaga |
269 |
Q |
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| T |
7702340 |
taaaataacttcgagatcatttagttattgaacagaattattatcatattaactgtagtttgattttatatgcttcgtctgcatttcccctaataaaaga |
7702241 |
T |
|
| Q |
270 |
aaagtatagtacatatttgttttagaaacacgaacaccgtactc----catgttcaacacacagttcgatgatgcaataatttgttcaactcaaccagtt |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7702240 |
aaagtatagtacatatttgttttagaaacacgaacaccgtactccatgcatgttcaacacacagttcgatgatgcaataatttgttcaactcaaccagtt |
7702141 |
T |
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| Q |
366 |
ttattttttactga |
379 |
Q |
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|||||||||||||| |
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| T |
7702140 |
ttattttttactga |
7702127 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 39064507 - 39064455
Alignment:
| Q |
112 |
ctgttcattatccaaattgcgtgtttctcttcttgttttacttccggcttatt |
164 |
Q |
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| T |
39064507 |
ctgtccattacccaaattgcgtgtttgtcttcttgttttacttcctgcttatt |
39064455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 38450055 - 38450083
Alignment:
| Q |
79 |
catgtgttactagatgtcaattatgttgt |
107 |
Q |
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| T |
38450055 |
catgtgttactagatgtcaattatgttgt |
38450083 |
T |
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