View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8990_low_11 (Length: 391)
Name: NF8990_low_11
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 44001079 - 44000736
Alignment:
| Q |
1 |
ctttttcaactctctttattaatacaagcaagaattcaataataacccttcaaattaattaaccccacaagattttcaatacaataattaatgacatagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44001079 |
ctttttcaactctctttattaatacaagcaagaattcaataataacccttcaaattaattaaccccacaagattttcaatacaataattaatgacatagc |
44000980 |
T |
|
| Q |
101 |
tctttcaatggtttcttgtaagttagtagtatttcacatcatattagcgataacattaatatcaacaacaacaacggttaccaaacaaatggtgcatatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000979 |
tctttcaatggtttcttgtaagttagtagtatttcacatcatattagcgataagattaatatcaacaacaacaacggttaccaaacaaatggtgcatatg |
44000880 |
T |
|
| Q |
201 |
aaaagtcatttttcacattgataagttttgtttcttttttatcactaaatcattacaagaacaagaaacaccgagaggcaatcacattcacgtgctctca |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44000879 |
aaaaatcatttttcacattgataagttttgtttcttttttatcactaaatcattacaagaacaagaaacaccgacaggcaatcacattcacgtgctctca |
44000780 |
T |
|
| Q |
301 |
tcatggcagctcgcacactttctcgtttgctctctcgctcccta |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44000779 |
tcatggcagctcgcacactttctcgtttgctctctcgctcccta |
44000736 |
T |
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