View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8990_low_14 (Length: 353)
Name: NF8990_low_14
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 177 - 348
Target Start/End: Original strand, 11530461 - 11530632
Alignment:
| Q |
177 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
276 |
Q |
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| T |
11530461 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
11530560 |
T |
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| Q |
277 |
acattccaacaccttgtatgaggatttaatcgagacagcaataaaacacgataaactcctacaacaccaaac |
348 |
Q |
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| T |
11530561 |
actttccaacaccttgtatgaggatttaatcgagacagcaataaaacacgacaaactcctacaacaccaaac |
11530632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 177 - 348
Target Start/End: Original strand, 11555958 - 11556129
Alignment:
| Q |
177 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
276 |
Q |
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| T |
11555958 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
11556057 |
T |
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| Q |
277 |
acattccaacaccttgtatgaggatttaatcgagacagcaataaaacacgataaactcctacaacaccaaac |
348 |
Q |
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| T |
11556058 |
actttccaacaccttgtatgacgatttaatcgagacagcaataaaacacgacaaactcctacaacaccaaac |
11556129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 11555815 - 11555891
Alignment:
| Q |
17 |
acatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaagttatgatagtaccataatttacagtcacttg |
93 |
Q |
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| T |
11555815 |
acatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaagttatgatagtactataatttacagtcacttg |
11555891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 11530169 - 11530213
Alignment:
| Q |
17 |
acatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaa |
61 |
Q |
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| T |
11530169 |
acatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaa |
11530213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 11556521 - 11556559
Alignment:
| Q |
273 |
acaaacattccaacaccttgtatgaggatttaatcgaga |
311 |
Q |
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| T |
11556521 |
acaaaccttccaacaccttgtatgacgatttaatcgaga |
11556559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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