View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8990_low_18 (Length: 343)
Name: NF8990_low_18
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 28789621 - 28789302
Alignment:
| Q |
16 |
tttcttgctgtgtgatatt--tacagtagatggaaagatatcagtgatgatgaacaatccttattgaatgaagattatttgattctttaaatggaagtat |
113 |
Q |
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| T |
28789621 |
tttcttgctgtgtgatattattacagtagatggaaagatattagtgatgatgaacaatccttattgaatgaagattatttgattctttaaatggaagtat |
28789522 |
T |
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| Q |
114 |
gtttggaacctgtagtgaatcatttcaagattaatatcacgatcattcatatttgtttcaattctcaactggcc-nnnnnnnnctctaacaattttgttg |
212 |
Q |
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| T |
28789521 |
gtttggaacctgtagtgaatcatttcaagattaatatcacgatcattcatatttgtttcaattctcaattggcctttttttttttctaacaattttgttg |
28789422 |
T |
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| Q |
213 |
cttgatttgatttctttggtaaaatttgcctattagagcttataattgattgcacaattaattcacttcatctatgtannnnnnnnnaatttgtgatgat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28789421 |
cttgatttgatttctttggtaaaatttgcctattagagcttataattgattgcacaattaattcacttcatctatgta-ttttttttaatttgtgatgat |
28789323 |
T |
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| Q |
313 |
atttgccttgttacacaggtt |
333 |
Q |
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||||||||||||| ||||||| |
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| T |
28789322 |
atttgccttgttaaacaggtt |
28789302 |
T |
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