View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8990_low_19 (Length: 298)
Name: NF8990_low_19
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 23 - 283
Target Start/End: Original strand, 52487674 - 52487933
Alignment:
| Q |
23 |
agtgagtctagtgacactgcttcttgcttatcttaaagtgttttaattctctgcattatttagacctttattcggatttagagacttgaaaagtaagagt |
122 |
Q |
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| T |
52487674 |
agtgagtctagtgacactgctccttgcttatcttaaagtgttttaattctctacattatttagacctttattcggatttagagacttgaaaagtaagagt |
52487773 |
T |
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| Q |
123 |
gactcatcttaggaaaagatagagtaacatatgatgatcctactttttcaaaagttgggggttcacatgtacaaatctagatccaataatttgaattatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52487774 |
gactcatcttaggaaaagatagagtaacatatgatgatcctactttttcaaaagttgggggttcacatgtacaaatctagatccaataatttgaattatt |
52487873 |
T |
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| Q |
223 |
tggtttatgtttttctttctagtttggatcccactaaaaccaataattaggtcaagcacag |
283 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52487874 |
tggtttatgtttttctttctag-ttggatcccactaaaaccaataattaggtcaagcacag |
52487933 |
T |
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