View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8990_low_2 (Length: 949)

Name: NF8990_low_2
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8990_low_2
NF8990_low_2
[»] chr3 (30 HSPs)
chr3 (4-932)||(11241619-11242547)
chr3 (4-78)||(11241541-11241615)
chr3 (5-72)||(11228699-11228766)
chr3 (125-223)||(11228839-11228938)
chr3 (848-932)||(9852972-9853056)
chr3 (848-932)||(9980561-9980645)
chr3 (848-932)||(10360691-10360775)
chr3 (848-932)||(10372801-10372885)
chr3 (848-932)||(10520580-10520664)
chr3 (848-932)||(10666630-10666714)
chr3 (845-930)||(10086272-10086357)
chr3 (845-930)||(10193192-10193277)
chr3 (847-932)||(11778871-11778956)
chr3 (848-932)||(10263796-10263880)
chr3 (848-932)||(10430931-10431015)
chr3 (44-87)||(11240723-11240766)
chr3 (847-932)||(10503746-10503831)
chr3 (847-932)||(10680674-10680759)
chr3 (651-708)||(11229155-11229212)
chr3 (847-932)||(11772329-11772414)
chr3 (5-78)||(54460066-54460139)
chr3 (848-932)||(10531876-10531960)
chr3 (848-932)||(10583677-10583761)
chr3 (215-267)||(54469490-54469542)
chr3 (885-932)||(10035098-10035145)
chr3 (42-84)||(11227878-11227920)
chr3 (6-84)||(11228076-11228154)
chr3 (26-84)||(54459238-54459296)
chr3 (23-80)||(11240624-11240681)
chr3 (23-84)||(11240936-11240997)
[»] chr4 (1 HSPs)
chr4 (845-932)||(17849810-17849897)
[»] scaffold0083 (1 HSPs)
scaffold0083 (848-932)||(54492-54576)
[»] chr8 (1 HSPs)
chr8 (845-932)||(44954547-44954634)
[»] chr2 (1 HSPs)
chr2 (850-932)||(26909983-26910065)


Alignment Details
Target: chr3 (Bit Score: 877; Significance: 0; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 877; E-Value: 0
Query Start/End: Original strand, 4 - 932
Target Start/End: Original strand, 11241619 - 11242547
Alignment:
Q  4 caacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacggagaaaaatgaggatttacaaag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241619 caacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacggagaaaaatgaggatttacaaag 11241718  T
Q  104 gattttgaacttgggcctaaatgtcactaaatattatccataaatgtaataatgaatagaatgcaacttcattatatgatgtagcatattaaaataagtt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241719 gattttgaacttgggcctaaatgtcactaaatattatccataaatgtaataatgaatagaatgcaacttcattatatgatgtagcatattaaaataagtt 11241818  T
Q  204 gttgccacttcatgttcaataatcacttagtatgtatgatgtattaagctttttgaataattgtgatattgtcaagagattactaatggaggttcccatt 303  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241819 gttgccacttcatgttcaatgatcacttagtatgtatgatgtattaagctttttgaataattgtgatattgtcaagagattactaatggaggttcccatt 11241918  T
Q  304 gtttactaagaaccagatgcagccttagggtttcaatggaatagagaagtgttagtaatacaaagcaatggaaatgtaaaatactaattactaaatgaaa 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241919 gtttactaagaaccagatgcagccttagggtttcaatggaatagagaagtgttagtaatacaaagcaatggaaatgtaaaatactaattactaaatgaaa 11242018  T
Q  404 aaagactaaactactcttaatatgatacaatatatgatatgacaaaaggagagatggatttgagactgtgcactgtagagagcttgagcttgagctggat 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11242019 aaagactaaactactcttaatatgatacaatatatgatatgacaaaaggagagatggatttgagactgtgcactgtagagagcttgagcttgagctggat 11242118  T
Q  504 gtagggagatttattctttgtgccactctgttgtctgcaagtgcaaaattttagcatgagaaagattctattttaaattctataattgcaaagataacat 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11242119 gtagggagatttattctttgtgccactctgttgtctgcaagtgcaaaattttagcatgagaaagattctattttaaattctataattgcaaagataacat 11242218  T
Q  604 gaagtttatattagaagcatcattcaacattgaatctcannnnnnnctagtccttccattccaaaataagccttgtgattgatgtttttacagattaaga 703  Q
    ||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11242219 gaagtttatattagaagcatcattcaacattgaat-tcatttttttctagtccttccattccaaaataagccttgtgattgatttttttacagattaaga 11242317  T
Q  704 aaagctctatatgaataaaaaatgttgatattctacaaaattatcctaattatatattggtttattacctattgtcatgtattgtgacattcatctttct 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  11242318 aaagctctatatgaataaaaaatgttgatattctacaaaattatcctaattatctattggtttattaactattgtcatgtattgtgacattcatctttct 11242417  T
Q  804 cttcgcggggattagggtgctattcatctttctcttcgcggggctcatattgtgactt-ggtcatttattattttgacagtaatgtgagctattttggac 902  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11242418 cttcgcggggattagggtgctattcatctttctcttcgcggggctcatattgtgacttgggtcatttattattttgacagtaatgtgagctattttggac 11242517  T
Q  903 caatgttcctgcttttgatacctttcttct 932  Q
    ||||||||||||||||||||||||||||||    
T  11242518 caatgttcctgcttttgatacctttcttct 11242547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 11241541 - 11241615
Alignment:
Q  4 caacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagctta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241541 caacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagctta 11241615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 11228699 - 11228766
Alignment:
Q  5 aacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttc 72  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11228699 aacaatgacattgacactaaggaaaaggagaaagctgccaaagattttgaaccaaggcctaatatttc 11228766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 11228839 - 11228938
Alignment:
Q  125 tgtcactaaatattatccataaatgtaataatgaa-tagaatgcaacttcattatatgatgtagcatattaaaataagttgttgccacttcatgttcaat 223  Q
    ||||||||||| | |||  |||||||||||||||| ||||||||||||||| ||| ||||||| |||||| |||||||| |||||  |||||||||||||    
T  11228839 tgtcactaaatctgatcattaaatgtaataatgaaatagaatgcaacttcaatatgtgatgtaacatatttaaataagtcgttgcagcttcatgttcaat 11228938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 848 - 932
Target Start/End: Complemental strand, 9853056 - 9852972
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    ||||||||| || ||||||||||||  | ||||||  |||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  9853056 tcatattgtaacctggtcatttatttctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttct 9852972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 848 - 932
Target Start/End: Complemental strand, 9980645 - 9980561
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    |||||||||||||| || |||||||  | ||||||  |||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  9980645 tcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttct 9980561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 848 - 932
Target Start/End: Original strand, 10360691 - 10360775
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    |||||||||||||||||| |||||| || |||| |  |||||||| |||||||| |||||||||| | ||| |||||||||||||    
T  10360691 tcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattttggagcaatgttccttccttttatacctttcttct 10360775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 848 - 932
Target Start/End: Original strand, 10372801 - 10372885
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    ||||||||||| |||||| |||||| || |||| |  |||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  10372801 tcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattttggaccaatgttccttccttttatacctttcttct 10372885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 848 - 932
Target Start/End: Complemental strand, 10520664 - 10520580
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    ||||||||||||||||| |||||||  | |||| |  |||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  10520664 tcatattgtgacttggtaatttattgatatgactgggatgtgagcaattttggaccaatgttccttccttttatacctttcttct 10520580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 848 - 932
Target Start/End: Complemental strand, 10666714 - 10666630
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    |||||||||||||| || |||||||  | ||||||  |||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  10666714 tcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttct 10666630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 845 - 930
Target Start/End: Complemental strand, 10086357 - 10086272
Alignment:
Q  845 ggctcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttctt 930  Q
    |||||||||||||| || | |||||||| || |||||| |||| |||  ||||||||||||||||||| | ||| |||||||||||    
T  10086357 ggctcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttctt 10086272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 845 - 930
Target Start/End: Complemental strand, 10193277 - 10193192
Alignment:
Q  845 ggctcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttctt 930  Q
    |||||||||||||| || | |||||||| || |||||| |||| |||  ||||||||||||||||||| | ||| |||||||||||    
T  10193277 ggctcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttctt 10193192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 847 - 932
Target Start/End: Original strand, 11778871 - 11778956
Alignment:
Q  847 ctcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    |||||||||||||||  |||||||||  | ||||||  |||||||| ||||||||||||||||| | | ||| |||||||||||||    
T  11778871 ctcatattgtgactttttcatttatttctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttct 11778956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 848 - 932
Target Start/End: Complemental strand, 10263880 - 10263796
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    ||||||||||||||  ||||||||| || ||| ||  |||||||| ||||||||| ||||||||| | ||| |||||||||||||    
T  10263880 tcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattttggactaatgttccttccttttatacctttcttct 10263796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 848 - 932
Target Start/End: Original strand, 10430931 - 10431015
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    ||||||||||||||  ||||||||   | ||||||  |||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  10430931 tcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttct 10431015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 11240723 - 11240766
Alignment:
Q  44 aaagattttgaaccaaggccaaatatttcagcttacggagaaaa 87  Q
    ||||||||||||||||| || |||||||||||||||||||||||    
T  11240723 aaagattttgaaccaagacccaatatttcagcttacggagaaaa 11240766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 847 - 932
Target Start/End: Complemental strand, 10503831 - 10503746
Alignment:
Q  847 ctcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    ||||||||||||||||  ||| ||||  | ||||||  |||||||  ||||||||||||||||||| | ||| |||||||||||||    
T  10503831 ctcatattgtgacttgtccatctatttctatgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttct 10503746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 847 - 932
Target Start/End: Complemental strand, 10680759 - 10680674
Alignment:
Q  847 ctcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    |||||||||||||||| |  ||||||||| ||||||  |||||||  |||||||||| |||||| | | ||| |||||||||||||    
T  10680759 ctcatattgtgacttgcttgtttattattatgacagggatgtgagaaattttggaccgatgttcattccttttatacctttcttct 10680674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 708
Target Start/End: Original strand, 11229155 - 11229212
Alignment:
Q  651 tagtccttccattccaaaataagccttgtgattgatgtttttacagattaagaaaagc 708  Q
    |||||| ||||||||||||||||| ||||||| ||| |||| ||||||| ||||||||    
T  11229155 tagtccctccattccaaaataagcgttgtgatagattttttcacagattcagaaaagc 11229212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 847 - 932
Target Start/End: Complemental strand, 11772414 - 11772329
Alignment:
Q  847 ctcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    |||||||||||||||  ||||||||   | ||||||  |||||||| ||||||||||||||||| | | ||| |||||||||||||    
T  11772414 ctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttcttct 11772329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 54460066 - 54460139
Alignment:
Q  5 aacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagctta 78  Q
    ||||||||  ||||||| ||| |||| || |||||||||||||||||||||| ||| || | ||||||||||||    
T  54460066 aacaatgaagttgacactaagaaaaaagaaaaagctgccaaagattttgaacaaagacccattatttcagctta 54460139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 848 - 932
Target Start/End: Complemental strand, 10531960 - 10531876
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    ||||||||| ||||| |  ||||||||| ||||||  |||||||  ||||||||||||| ||||| | ||| |||||||||||||    
T  10531960 tcatattgtaacttgcttgtttattattatgacagggatgtgagaaattttggaccaattttccttccttttatacctttcttct 10531876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 848 - 932
Target Start/End: Complemental strand, 10583761 - 10583677
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    |||||||||||||| || |||||||  | ||||||  |||||||| ||||||||||||| ||| | | ||| |||||||||||||    
T  10583761 tcatattgtgactttgtgatttatttgtatgacagggatgtgagcaattttggaccaatattcattccttttatacctttcttct 10583677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 54469490 - 54469542
Alignment:
Q  215 atgttcaataatcacttagtatgtatgatgtattaagctttttgaataattgt 267  Q
    |||||| || || |||||| ||||||| |||||||||||||||||||||||||    
T  54469490 atgttcgatgattacttagcatgtatgctgtattaagctttttgaataattgt 54469542  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 932
Target Start/End: Complemental strand, 10035145 - 10035098
Alignment:
Q  885 atgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    |||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  10035145 atgtgagcaattttggaccaatgttccttccttttatacctttcttct 10035098  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 11227878 - 11227920
Alignment:
Q  42 ccaaagattttgaaccaaggccaaatatttcagcttacggaga 84  Q
    |||||||||||||| ||||||| || |||||||||||||||||    
T  11227878 ccaaagattttgaatcaaggcccaacatttcagcttacggaga 11227920  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 11228076 - 11228154
Alignment:
Q  6 acaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacggaga 84  Q
    |||||||||||||   |||||||||| ||  |||  | ||||||||||||||||| ||||| ||||||||||| |||||    
T  11228076 acaatgatattgatgtcaaggaaaagaagggagccactaaagattttgaaccaagaccaaacatttcagcttatggaga 11228154  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 54459238 - 54459296
Alignment:
Q  26 gaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacggaga 84  Q
    |||||| ||||| | | |||||||||||||||||| || |||||||||||||| |||||    
T  54459238 gaaaagaagaaaccagtcaaagattttgaaccaagacccaatatttcagcttatggaga 54459296  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 11240624 - 11240681
Alignment:
Q  23 aaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacg 80  Q
    ||||||||| ||||||  | ||||||||| |||||||| || ||||||||||||||||    
T  11240624 aaggaaaagaagaaagtcgtcaaagatttcgaaccaagacctaatatttcagcttacg 11240681  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 11240936 - 11240997
Alignment:
Q  23 aaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacggaga 84  Q
    ||||||||| ||||||| | ||||||||| |||||||| || | ||||||||||| ||||||    
T  11240936 aaggaaaagaagaaagccgtcaaagatttcgaaccaagacctagtatttcagcttgcggaga 11240997  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 845 - 932
Target Start/End: Original strand, 17849810 - 17849897
Alignment:
Q  845 ggctcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    ||||||||||||||||||||| |  |||  | ||||||  |||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  17849810 ggctcatattgtgacttggtcctcaatttctatgacagggatgtgagcaattttggaccaatgttcctgccttttatacctttcttct 17849897  T

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Target: scaffold0083 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 848 - 932
Target Start/End: Original strand, 54492 - 54576
Alignment:
Q  848 tcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    |||||||||||||| || |||||||  | ||||||  |||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  54492 tcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttct 54576  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 845 - 932
Target Start/End: Original strand, 44954547 - 44954634
Alignment:
Q  845 ggctcatattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    ||||||||||||||||||| ||| ||||  | |||||  ||| | ||| ||||||||||||||||||| | ||  |||||||||||||    
T  44954547 ggctcatattgtgacttggccatctatttctatgacatgaattttagcaattttggaccaatgttccttccttctatacctttcttct 44954634  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 850 - 932
Target Start/End: Complemental strand, 26910065 - 26909983
Alignment:
Q  850 atattgtgacttggtcatttattattttgacagtaatgtgagctattttggaccaatgttcctgcttttgatacctttcttct 932  Q
    ||||| ||||||| | |||||||  | ||||||  |||||||| ||||||||||||||||||| | |||  ||||||||||||    
T  26910065 atattatgacttgttgatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttgtacctttcttct 26909983  T

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