View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8990_low_22 (Length: 269)

Name: NF8990_low_22
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8990_low_22
NF8990_low_22
[»] chr7 (4 HSPs)
chr7 (36-80)||(10893303-10893347)
chr7 (24-71)||(31020637-31020684)
chr7 (31-74)||(44317232-44317275)
chr7 (44-74)||(10702458-10702488)
[»] chr5 (5 HSPs)
chr5 (36-72)||(35053690-35053726)
chr5 (37-73)||(41016446-41016482)
chr5 (38-72)||(35070007-35070041)
chr5 (37-67)||(41017976-41018006)
chr5 (26-70)||(38794707-38794751)
[»] scaffold0122 (1 HSPs)
scaffold0122 (44-83)||(10243-10282)
[»] chr2 (3 HSPs)
chr2 (43-74)||(13501037-13501068)
chr2 (38-76)||(17749830-17749868)
chr2 (27-64)||(35390648-35390685)
[»] chr6 (4 HSPs)
chr6 (26-80)||(33141650-33141704)
chr6 (31-79)||(785384-785433)
chr6 (15-79)||(34197170-34197235)
chr6 (27-79)||(32575517-32575569)
[»] chr3 (1 HSPs)
chr3 (26-72)||(14782803-14782849)
[»] chr8 (1 HSPs)
chr8 (31-72)||(11203067-11203108)
[»] chr4 (2 HSPs)
chr4 (27-72)||(4790767-4790812)
chr4 (28-80)||(5998883-5998936)
[»] chr1 (2 HSPs)
chr1 (44-72)||(5243301-5243329)
chr1 (43-79)||(50233468-50233504)


Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 10893347 - 10893303
Alignment:
Q  36 ggacaccagacacaccttcaatcagaagtgtcggtgcaatagagt 80  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||    
T  10893347 ggacaccagacacgccttcaatcagaagtgttggtgcaatagagt 10893303  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 31020684 - 31020637
Alignment:
Q  24 aggacacgtgtaggacaccagacacaccttcaatcagaagtgtcggtg 71  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  31020684 aggacacgtgttggacaccggacacaccttccatcagaagtgtcggtg 31020637  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 44317275 - 44317232
Alignment:
Q  31 gtgtaggacaccagacacaccttcaatcagaagtgtcggtgcaa 74  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||    
T  44317275 gtgtcggacaccagacacgccttcaatcaaaagtgtcggtgcaa 44317232  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 74
Target Start/End: Complemental strand, 10702488 - 10702458
Alignment:
Q  44 gacacaccttcaatcagaagtgtcggtgcaa 74  Q
    |||||||||||||||||||||||||||||||    
T  10702488 gacacaccttcaatcagaagtgtcggtgcaa 10702458  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 35053726 - 35053690
Alignment:
Q  36 ggacaccagacacaccttcaatcagaagtgtcggtgc 72  Q
    |||||| ||||||||||||||||||||||||||||||    
T  35053726 ggacacgagacacaccttcaatcagaagtgtcggtgc 35053690  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 41016482 - 41016446
Alignment:
Q  37 gacaccagacacaccttcaatcagaagtgtcggtgca 73  Q
    ||||| |||||||||||||||||||||||||||||||    
T  41016482 gacactagacacaccttcaatcagaagtgtcggtgca 41016446  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 35070041 - 35070007
Alignment:
Q  38 acaccagacacaccttcaatcagaagtgtcggtgc 72  Q
    |||| ||||||||||||||||||||||||||||||    
T  35070041 acactagacacaccttcaatcagaagtgtcggtgc 35070007  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 41018006 - 41017976
Alignment:
Q  37 gacaccagacacaccttcaatcagaagtgtc 67  Q
    |||||||||||||||||||||||||||||||    
T  41018006 gacaccagacacaccttcaatcagaagtgtc 41017976  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 38794751 - 38794707
Alignment:
Q  26 gacacgtgtaggacaccagacacaccttcaatcagaagtgtcggt 70  Q
    ||||||||| |||||||||||||  ||||||||||| ||||||||    
T  38794751 gacacgtgttggacaccagacacgtcttcaatcagaggtgtcggt 38794707  T

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Target: scaffold0122 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 10282 - 10243
Alignment:
Q  44 gacacaccttcaatcagaagtgtcggtgcaatagagtgta 83  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  10282 gacacaccttcaatcagaagtgtctgtgcaagagagtgta 10243  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 13501068 - 13501037
Alignment:
Q  43 agacacaccttcaatcagaagtgtcggtgcaa 74  Q
    ||||||||||||||||||||||||||||||||    
T  13501068 agacacaccttcaatcagaagtgtcggtgcaa 13501037  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 17749868 - 17749830
Alignment:
Q  38 acaccagacacaccttcaatcagaagtgtcggtgcaata 76  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  17749868 acaccagacacaccttccattagaagtgtcggtgcaata 17749830  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 35390648 - 35390685
Alignment:
Q  27 acacgtgtaggacaccagacacaccttcaatcagaagt 64  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  35390648 acacgtgttggacaccagacacaccttcaatctgaagt 35390685  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 33141650 - 33141704
Alignment:
Q  26 gacacgtgtaggacaccagacacaccttcaatcagaagtgtcggtgcaatagagt 80  Q
    ||||||||||||||| | | ||||||||| |||| |||||||||||| |||||||    
T  33141650 gacacgtgtaggacagcgggcacaccttccatcaaaagtgtcggtgctatagagt 33141704  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 785433 - 785384
Alignment:
Q  31 gtgtaggacaccag-acacaccttcaatcagaagtgtcggtgcaatagag 79  Q
    |||| ||||||||| ||||||||||||||||||||||| |||||| ||||    
T  785433 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 785384  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 34197170 - 34197235
Alignment:
Q  15 gtgttagataggacacgtgtaggacaccag-acacaccttcaatcagaagtgtcggtgcaatagag 79  Q
    |||||||| | ||||||||| ||| ||||| ||||||||||||  ||||||||| |||||||||||    
T  34197170 gtgttagacaagacacgtgtcggagaccaggacacaccttcaactagaagtgtcagtgcaatagag 34197235  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 32575517 - 32575569
Alignment:
Q  27 acacgtgtaggacaccagacacaccttcaatcagaagtgtcggtgcaatagag 79  Q
    |||||||| ||||||| | ||||| ||| ||||||||||||||||| ||||||    
T  32575517 acacgtgttggacaccggccacactttctatcagaagtgtcggtgccatagag 32575569  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 14782849 - 14782803
Alignment:
Q  26 gacacgtgtaggacaccagacacaccttcaatcagaagtgtcggtgc 72  Q
    ||||||||| ||||||||||||| | ||| |||||||||||||||||    
T  14782849 gacacgtgttggacaccagacacgctttccatcagaagtgtcggtgc 14782803  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 11203067 - 11203108
Alignment:
Q  31 gtgtaggacaccagacacaccttcaatcagaagtgtcggtgc 72  Q
    |||| ||||||| ||||||||||| |||||||||||||||||    
T  11203067 gtgttggacaccggacacaccttcgatcagaagtgtcggtgc 11203108  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 4790767 - 4790812
Alignment:
Q  27 acacgtgtaggacaccagacacaccttcaatcagaagtgtcggtgc 72  Q
    |||| |||| ||||||  ||||||||||||||||||||||||||||    
T  4790767 acacatgtaagacaccgaacacaccttcaatcagaagtgtcggtgc 4790812  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 5998883 - 5998936
Alignment:
Q  28 cacgtgtaggacaccag-acacaccttcaatcagaagtgtcggtgcaatagagt 80  Q
    ||||||| ||||||| | ||||||||||||||| |||||||||||||| |||||    
T  5998883 cacgtgtcggacacctggacacaccttcaatcataagtgtcggtgcaacagagt 5998936  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 5243301 - 5243329
Alignment:
Q  44 gacacaccttcaatcagaagtgtcggtgc 72  Q
    |||||||||||||||||||||||||||||    
T  5243301 gacacaccttcaatcagaagtgtcggtgc 5243329  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 50233468 - 50233504
Alignment:
Q  43 agacacaccttcaatcagaagtgtcggtgcaatagag 79  Q
    |||||||| |||||| |||||||||||||||||||||    
T  50233468 agacacacgttcaataagaagtgtcggtgcaatagag 50233504  T

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