View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8990_low_25 (Length: 239)

Name: NF8990_low_25
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8990_low_25
NF8990_low_25
[»] chr7 (10 HSPs)
chr7 (19-225)||(46524459-46524665)
chr7 (22-225)||(46532012-46532215)
chr7 (25-218)||(46322900-46323093)
chr7 (19-218)||(46326599-46326798)
chr7 (19-218)||(46490172-46490371)
chr7 (19-218)||(46520400-46520599)
chr7 (25-206)||(46516771-46516952)
chr7 (19-224)||(46478964-46479169)
chr7 (133-206)||(46494482-46494555)
chr7 (133-218)||(46464845-46464928)
[»] chr3 (1 HSPs)
chr3 (31-218)||(7475365-7475552)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 46524665 - 46524459
Alignment:
Q  19 gctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgaccttgttgcactta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46524665 gctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgatcttgttgcactta 46524566  T
Q  119 tagattttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46524565 tagattttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc 46524466  T
Q  219 tgatgtc 225  Q
    | |||||    
T  46524465 ttatgtc 46524459  T

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Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 46532215 - 46532012
Alignment:
Q  22 gttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatag 121  Q
    |||||||| ||||| |||||||||||||||||||| ||||| |||||| | || |||||||| ||||||||||| |||||||||||||||||||||||||    
T  46532215 gttgctccagatctgcgtggctatggtgacaccgaggctccatcttcaataagcagctacactggttttcacattgtaggtgaccttgttgcacttatag 46532116  T
Q  122 attttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagctga 221  Q
    |||| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46532115 atttgcttggtgttgaccaagtgtttcttgtggctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagctta 46532016  T
Q  222 tgtc 225  Q
    ||||    
T  46532015 tgtc 46532012  T

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Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 46322900 - 46323093
Alignment:
Q  25 gctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagatt 124  Q
    ||||| ||||| ||||||||||||||||| || ||||| |||||| | || |||||||||||||||||||| |||||||| || ||||||||||||||||    
T  46322900 gctccggatctacgtggctatggtgacactgaggctccatcttcaataagcagctacacaggttttcacattgtaggtgatctggttgcacttatagatt 46322999  T
Q  125 ttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc 218  Q
    | || || |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  46323000 tgcttggcgttgatcaagtgtttcttgtagctcatgattggggtgccatcattggttggtacctttgcatgtttcgccctgaaagaatcaaagc 46323093  T

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Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 46326599 - 46326798
Alignment:
Q  19 gctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgaccttgttgcactta 118  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||  |||| ||||||||| |||||||| |||| |||||| ||||| | || |    
T  46326599 gctgttgctcccgatctccgtggctatggtgacacagatgttccgtcttccattagcagctacacatgttttcacgtagttggtgacattgtttctctca 46326698  T
Q  119 tagattttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc 218  Q
    | || || || ||||| || ||||| || ||||||| |||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46326699 tcgacttgcttggtgtggaacaagttttccttgttggtcatgatatgggtgccatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc 46326798  T

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Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 46490371 - 46490172
Alignment:
Q  19 gctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgaccttgttgcactta 118  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||| | ||  ||||||||||||||   || ||  | || |||||| | ||||| || |    
T  46490371 gctgttgctccagatctccgtggttatggcgacaccgatgctccggcctccattagtagctacacaatcttccatttggttggtgacatcgttgctctca 46490272  T
Q  119 tagattttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc 218  Q
    | || |  || || ||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  46490271 tcgactcacttggcgttgaccgagtgtttcttgtagctcatgattggggtgccatcattggttggtatctttgtttgtttcgccctgaaagaatcaaagc 46490172  T

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Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 46520599 - 46520400
Alignment:
Q  19 gctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgaccttgttgcactta 118  Q
    ||||||||||| ||||| |||||||| || ||||||||||||||  ||||| | || |||||||||   || ||| | || |||||  | ||||| || |    
T  46520599 gctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctca 46520500  T
Q  119 tagattttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc 218  Q
    | || |  || || ||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||    
T  46520499 tcgactcactcggcgttgaccaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgcatgtttcgccctgaaagaatcaaagc 46520400  T

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Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 46516952 - 46516771
Alignment:
Q  25 gctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagatt 124  Q
    ||||| |||||| ||||||| |||||||| ||||||||  ||||||||||||||||||||  ||| ||  | || |||||  | ||||| || || || |    
T  46516952 gctccagatctctgtggctacggtgacactgatgctcccacttcagttagtagctacacaattttacatttggttggtgatatcgttgctctaattgact 46516853  T
Q  125 ttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctga 206  Q
      |||||||| || ||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  46516852 cactgggtgtggaccaagttttccttgtggctcatgattggggtgctatcattggttggtatctttgtttgtttcgtcctga 46516771  T

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Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 46479169 - 46478964
Alignment:
Q  19 gctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgaccttgttgcactta 118  Q
    ||||||||||| ||||| |||||||| || ||||||||||||||  ||||| | || |||||||||   || ||| | || |||||  | ||||| || |    
T  46479169 gctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctca 46479070  T
Q  119 tagattttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc 218  Q
    | || |  || || ||||| |||||||| ||||| ||||||||||||||||| || |||||||||||||||||| | ||||||||||||| |||||||||    
T  46479069 tcgactcactcggcgttgaccaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagc 46478970  T
Q  219 tgatgt 224  Q
    | ||||    
T  46478969 ttatgt 46478964  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 46494555 - 46494482
Alignment:
Q  133 gttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctga 206  Q
    ||||||||||| || ||||| ||||||||||||||||| ||| ||||||||||||||||  |||||||||||||    
T  46494555 gttgatcaagtcttccttgtggctcatgattggggtgccatcgttggttggtatctttgcttgtttcgccctga 46494482  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 46464928 - 46464845
Alignment:
Q  133 gttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc 218  Q
    ||||||||||| ||| ||||||||||||||||||||||  | | |||||||||||  ||| ||||||| ||||||||| |||||||    
T  46464928 gttgatcaagtcttttttgttgctcatgattggggtgccttaactggttggtatc--tgtttgtttcgtcctgaaagagtcaaagc 46464845  T

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Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 7475365 - 7475552
Alignment:
Q  31 gatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagattttctgg 130  Q
    ||||||||||||||||||||||||||| |||| |||||| | || ||||||||||| ||||| || || ||||||||||||||||||||||||||||| |    
T  7475365 gatctccgtggctatggtgacaccgattctccatcttcaataagcagctacacagggtttcatatggttggtgaccttgttgcacttatagattttcttg 7475464  T
Q  131 gtgttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc 218  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||    
T  7475465 gtgttgatcaagtgtttcttgtggctcatgattggggtgccatcattggttggtacctttgcacgtttcgccctgaaagaatcaaagc 7475552  T

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