View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8990_low_29 (Length: 219)
Name: NF8990_low_29
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 50879324 - 50879536
Alignment:
| Q |
1 |
tgaatcttgtttcatgtttactgcactttcctgtctgtggcatgttcctagaccattcatcgccaatgtctaatgaagaagtgttgacttgcttaatgcg |
100 |
Q |
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| T |
50879324 |
tgaatcttgtttcatgtttactgcactttcctgtctgtggcatgttcctagaccattcatcgccaatgtctaatgaagaagtgttgacttgcttaatgcg |
50879423 |
T |
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| Q |
101 |
caacttgaattaaaacttagaagaaacttagaccgagtacgacataggtgcttagataacatttagctggctttaagaagtcttggcttaattgatccct |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50879424 |
caacttgaattaaaacttagaag------agaccgagtacgacataggtgcttagataacatttagctggctttaagaagtcttggcttaattgatccct |
50879517 |
T |
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| Q |
201 |
taacttatttcttttattc |
219 |
Q |
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||||||||||||||||||| |
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| T |
50879518 |
taacttatttcttttattc |
50879536 |
T |
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