View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8990_low_3 (Length: 753)
Name: NF8990_low_3
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 699; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 18 - 736
Target Start/End: Original strand, 38886641 - 38887359
Alignment:
| Q |
18 |
gaattcatccctactcttgaaggagagaatggaatctgctgtactcatccagagaagttaccaggtcaatttaagccaccaaatatatacatgccttata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886641 |
gaattcatccctactcttgaaggagagaatggaatctgctgtactcatccagagaagttaccaggtcaatttaagccaccaaatatatacatgccttata |
38886740 |
T |
|
| Q |
118 |
attaactttccatttattttattctttcatagtttctaataaaaaagtctcatcttgtatcgtatatatgacggtttttgtgtgttaatttattatttta |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
38886741 |
attaactttccatttcttttattctttcatagtttctaataaaaaagtctcatcttgtatcgtatatataaagttttttgtgtgttaatttattatttta |
38886840 |
T |
|
| Q |
218 |
cgtctaatatgcaggtgtcggcaaagatggactgatccgacatttctttcacaggccatcaaaagcatacacaacaggaacaagaaaaagaagaaaagtg |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886841 |
cgtctaatatgcaggagtcggcaaagatggactgatccgacatttctttcacaggccatcaaaagcatacacaacaggaacaagaaaaagaagaaaagtg |
38886940 |
T |
|
| Q |
318 |
cacacagatgctgatggaagtgagacaagatggcacaaaacaggtaaaacaaggccagttttcgtgagtggcaagttaaaagggtataagaaaattcttg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886941 |
cacacagatgctgatggaagtgagacaagatggcacaaaacaggtaaaacaaggccagttttcgtgagtggcaagttaaaagggtataagaaaattcttg |
38887040 |
T |
|
| Q |
418 |
tgctttacactaactacagaaagcaaagaaagccagagaaaacaaattgggttatgcaccaataccatcttggaaacaatgaagaggagaaagaagggga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38887041 |
tgctttacactaactacagaaagcaaagaaagccagagaaaacaaattgggttatgcaccaataccatcttggaaacaatgaagaggagaaagaagggga |
38887140 |
T |
|
| Q |
518 |
attggtagtttccaaagttttctaccaaacacagcctagacaatgtggtggttcattgatgaaagactcggcatcattttctgataaaaaactaaatggt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38887141 |
attggtagtttccaaagttttctaccaaacacagcctagacaatgtggtggttcattgatgaaagactcggcatcattttctgataaaaaactaaatggt |
38887240 |
T |
|
| Q |
618 |
gatcaaggtgtgcatgaggtggttaatcataaaaccagtggatttgttgaatactatagtacttctttcatatcttttgatcaaggggaacaacatagat |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38887241 |
gatcaaggtgtgcatgaggtggttaatcataaaaccagtggatttgttgaatactatagtacttctttcatatcttttgatcaaggggaacaacatagat |
38887340 |
T |
|
| Q |
718 |
caaacaatgctcaagtgat |
736 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38887341 |
caaacaatgctcaagtgat |
38887359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 4235598 - 4235701
Alignment:
| Q |
264 |
tttcacaggccatcaaaagcatacacaacaggaacaagaaaaagaagaaaagtgcacacagatgctgatggaagtgagacaagatggcacaaaacaggta |
363 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| ||||||||||| || ||||| |||| || |||| ||| |||||||||||||||||||| | |
|
|
| T |
4235598 |
tttcataggccttcaaaagcatacacaacaggaacaaggaaaagaagaaaggttcacactgatgaagaaggaattgaaacaagatggcacaaaacaggga |
4235697 |
T |
|
| Q |
364 |
aaac |
367 |
Q |
| |
|
|||| |
|
|
| T |
4235698 |
aaac |
4235701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 560
Target Start/End: Original strand, 4235779 - 4235894
Alignment:
| Q |
445 |
gaaagccagagaaaacaaattgggttatgcaccaataccatcttggaaacaatgaagaggagaaagaaggggaattggtagtttccaaagttttctacca |
544 |
Q |
| |
|
|||| |||||||| || |||||||| ||||| |||||||||||||| | |||||||| || | ||| || ||||| || | ||| || | |||||||| |
|
|
| T |
4235779 |
gaaaaccagagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaattcgttgcttcaaagatcttctacca |
4235878 |
T |
|
| Q |
545 |
aacacagcctagacaa |
560 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4235879 |
gacacagcctagacaa |
4235894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 238 - 569
Target Start/End: Original strand, 30505700 - 30506034
Alignment:
| Q |
238 |
gcaaagatggactgatccgacatttctttcacaggccatcaaaagcatacacaacaggaacaagaaaaagaagaaaagtgcacacagat---gctgatgg |
334 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||| || ||||||||||||||||| |||||||||||||| || || | ||| | ||||| |
|
|
| T |
30505700 |
gcaaagatggactgatccgccatttctttcaccggccatccaaggcatacacaacaggaactagaaaaagaagaaaggtacattccgatcacgaggatgg |
30505799 |
T |
|
| Q |
335 |
aagtgagacaagatggcacaaaacaggtaaaacaaggccagttttcgtgagtggcaagttaaaagggtataagaaaattcttgtgctttacactaactac |
434 |
Q |
| |
|
||| || || | |||||||||||||||||||| || ||||| | | | | |||||||||||| || || ||||||||||| |||||||| ||||| |
|
|
| T |
30505800 |
aagcgaaacccgttggcacaaaacaggtaaaactagaccagtctacaacaattccaagttaaaaggttacaaaaaaattcttgtactttacacaaactat |
30505899 |
T |
|
| Q |
435 |
agaaagcaaagaaagccagagaaaacaaattgggttatgcaccaataccatcttggaaacaatgaagaggagaaagaaggggaattggtagtttccaaag |
534 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| || || |||||||| | ||||||| ||||||||||| | || || || ||||||| |
|
|
| T |
30505900 |
ggaaaacaaagaaagccagagaaaacaaattgggtgatgcatcagtatcatcttgggagtgatgaagaagagaaagaaggagtgttagttgtgtccaaag |
30505999 |
T |
|
| Q |
535 |
ttttctaccaaacacagcctagacaatgtggtggt |
569 |
Q |
| |
|
||||||| ||||| || || ||||| ||||||||| |
|
|
| T |
30506000 |
ttttctatcaaactcaaccaagacagtgtggtggt |
30506034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 240 - 569
Target Start/End: Complemental strand, 34830163 - 34829834
Alignment:
| Q |
240 |
aaagatggactgatccgacatttctttcacaggccatcaaaagcatacacaacaggaacaagaaaaagaagaaaagtgcacacagatgctgatggaagtg |
339 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || || || |||| || ||||||| |
|
|
| T |
34830163 |
aaagatggacagatccggcacttctttcacaggccatctaaagcatacacaacaggaacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtg |
34830064 |
T |
|
| Q |
340 |
agacaagatggcacaaaacaggtaaaacaaggccagtt-ttcgtga--gtggcaagttaaaagggtataagaaaattcttgtgctttacactaactacag |
436 |
Q |
| |
|
| |||||||||||||||||||| ||||| || |||||| || ||| ||| | | ||||| | ||||| || || || || ||||| ||||| | |
|
|
| T |
34830063 |
aaacaagatggcacaaaacagggaaaactagaccagttattattgaaggtgtta---tgaaaggtttcaagaagatactagtcctctacaccaactatgg |
34829967 |
T |
|
| Q |
437 |
aaagcaaagaaagccagagaaaacaaattgggttatgcaccaataccatcttggaaacaatgaagaggagaaagaaggggaattggtagtttccaaagtt |
536 |
Q |
| |
|
|| ||||| ||||| ||||| || |||||||| ||||| |||||||| ||||| | |||||||| |||||||| || ||||| || ||||| || || |
|
|
| T |
34829966 |
aaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaggtg |
34829867 |
T |
|
| Q |
537 |
ttctaccaaacacagcctagacaatgtggtggt |
569 |
Q |
| |
|
|| ||||||||||| ||| |||||||||||||| |
|
|
| T |
34829866 |
ttttaccaaacacaacctcgacaatgtggtggt |
34829834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 30513100 - 30513176
Alignment:
| Q |
238 |
gcaaagatggactgatccgacatttctttcacaggccatcaaaag-catacacaacaggaacaagaaaaagaagaaa |
313 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| | ||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30513100 |
gcaaagatggactgatccggcatttcattcaccgaccatccaaaggcatacacaacaggaacaagaaaaagaagaaa |
30513176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 30505051 - 30505103
Alignment:
| Q |
21 |
ttcatccctactcttgaaggagagaatggaatctgctgtactcatccagagaa |
73 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30505051 |
ttcatccctactcttgaaggagaaaatggaatctgctatactcatccagagaa |
30505103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 240 - 377
Target Start/End: Complemental strand, 28949018 - 28948881
Alignment:
| Q |
240 |
aaagatggactgatccgacatttctttcacaggccatcaaaagcatacacaacaggaacaagaaaaagaagaaaagtgcacacagatgctgatggaagtg |
339 |
Q |
| |
|
|||||||||| |||||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||||| || || || |||| || ||||||| |
|
|
| T |
28949018 |
aaagatggacagatccggcacttttttcacaggccatctaaagcatacacaacaggaacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtg |
28948919 |
T |
|
| Q |
340 |
agacaagatggcacaaaacaggtaaaacaaggccagtt |
377 |
Q |
| |
|
| |||||||||||||||||||| ||||| || |||||| |
|
|
| T |
28948918 |
aaacaagatggcacaaaacagggaaaactagaccagtt |
28948881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 43015143 - 43015252
Alignment:
| Q |
405 |
aagaaaattcttgtgctttacactaactacagaaagcaaagaaagccagagaaaacaaattgggttatgcaccaataccatcttggaaacaatgaagagg |
504 |
Q |
| |
|
|||||||||||||| || ||||| |||| | ||||| | |||| || ||||| || |||||||| ||||| ||||||||||||||| | ||||||| | |
|
|
| T |
43015143 |
aagaaaattcttgttctctacaccaacttcggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaag |
43015242 |
T |
|
| Q |
505 |
agaaagaagg |
514 |
Q |
| |
|
|||||||||| |
|
|
| T |
43015243 |
agaaagaagg |
43015252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University