View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8990_low_5 (Length: 748)

Name: NF8990_low_5
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8990_low_5
NF8990_low_5
[»] chr3 (13 HSPs)
chr3 (4-734)||(11241619-11242349)
chr3 (4-78)||(11241541-11241615)
chr3 (5-72)||(11228699-11228766)
chr3 (125-223)||(11228839-11228938)
chr3 (44-87)||(11240723-11240766)
chr3 (650-707)||(11229155-11229212)
chr3 (5-78)||(54460066-54460139)
chr3 (215-267)||(54469490-54469542)
chr3 (42-84)||(11227878-11227920)
chr3 (6-84)||(11228076-11228154)
chr3 (26-84)||(54459238-54459296)
chr3 (23-80)||(11240624-11240681)
chr3 (23-84)||(11240936-11240997)


Alignment Details
Target: chr3 (Bit Score: 708; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 4 - 734
Target Start/End: Original strand, 11241619 - 11242349
Alignment:
Q  4 caacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacggagaaaaatgaggatttacaaag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241619 caacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacggagaaaaatgaggatttacaaag 11241718  T
Q  104 gattttgaacttgggcctaaatgtcactaaatattatccataaatgtaataatgaatagaatgcaacttcattatatgatgtagcatattaaaataagtt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241719 gattttgaacttgggcctaaatgtcactaaatattatccataaatgtaataatgaatagaatgcaacttcattatatgatgtagcatattaaaataagtt 11241818  T
Q  204 gttgccacttcatgttcaataatcacttagtatgtatgatgtattaagctttttgaataattgtgatattgtcaagagattactaatggaggttcccatt 303  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241819 gttgccacttcatgttcaatgatcacttagtatgtatgatgtattaagctttttgaataattgtgatattgtcaagagattactaatggaggttcccatt 11241918  T
Q  304 gtttactaagaaccagatgcagccttagggtttcaatggaatagagaagtgttagtaatacaaagcaatggaaatgtaaaatactaattactaaatgaaa 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241919 gtttactaagaaccagatgcagccttagggtttcaatggaatagagaagtgttagtaatacaaagcaatggaaatgtaaaatactaattactaaatgaaa 11242018  T
Q  404 aaagactaaactactcttaatatgatacaatatatgatatgacaaaaggagagatggatttgagactgtgcactgtagagagcttgagcttgagctggat 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11242019 aaagactaaactactcttaatatgatacaatatatgatatgacaaaaggagagatggatttgagactgtgcactgtagagagcttgagcttgagctggat 11242118  T
Q  504 gtagggagatttattctttgtgccactctgttgtctgcaagtgcaaaattttagcatgagaaagattctattttaaattctataattgcaaagataacat 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11242119 gtagggagatttattctttgtgccactctgttgtctgcaagtgcaaaattttagcatgagaaagattctattttaaattctataattgcaaagataacat 11242218  T
Q  604 gaagtttatattagaagcatcattcaacattgaatctca-ttttttctagtccttccattccaaaataagccttgtgattgatgtttttacagattaaga 702  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11242219 gaagtttatattagaagcatcattcaacattgaat-tcatttttttctagtccttccattccaaaataagccttgtgattgatttttttacagattaaga 11242317  T
Q  703 aaagctctatatgaataaaaaatgttgatatt 734  Q
    ||||||||||||||||||||||||||||||||    
T  11242318 aaagctctatatgaataaaaaatgttgatatt 11242349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 11241541 - 11241615
Alignment:
Q  4 caacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagctta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241541 caacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagctta 11241615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 11228699 - 11228766
Alignment:
Q  5 aacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttc 72  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11228699 aacaatgacattgacactaaggaaaaggagaaagctgccaaagattttgaaccaaggcctaatatttc 11228766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 11228839 - 11228938
Alignment:
Q  125 tgtcactaaatattatccataaatgtaataatgaa-tagaatgcaacttcattatatgatgtagcatattaaaataagttgttgccacttcatgttcaat 223  Q
    ||||||||||| | |||  |||||||||||||||| ||||||||||||||| ||| ||||||| |||||| |||||||| |||||  |||||||||||||    
T  11228839 tgtcactaaatctgatcattaaatgtaataatgaaatagaatgcaacttcaatatgtgatgtaacatatttaaataagtcgttgcagcttcatgttcaat 11228938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 11240723 - 11240766
Alignment:
Q  44 aaagattttgaaccaaggccaaatatttcagcttacggagaaaa 87  Q
    ||||||||||||||||| || |||||||||||||||||||||||    
T  11240723 aaagattttgaaccaagacccaatatttcagcttacggagaaaa 11240766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 707
Target Start/End: Original strand, 11229155 - 11229212
Alignment:
Q  650 tagtccttccattccaaaataagccttgtgattgatgtttttacagattaagaaaagc 707  Q
    |||||| ||||||||||||||||| ||||||| ||| |||| ||||||| ||||||||    
T  11229155 tagtccctccattccaaaataagcgttgtgatagattttttcacagattcagaaaagc 11229212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 54460066 - 54460139
Alignment:
Q  5 aacaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagctta 78  Q
    ||||||||  ||||||| ||| |||| || |||||||||||||||||||||| ||| || | ||||||||||||    
T  54460066 aacaatgaagttgacactaagaaaaaagaaaaagctgccaaagattttgaacaaagacccattatttcagctta 54460139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 54469490 - 54469542
Alignment:
Q  215 atgttcaataatcacttagtatgtatgatgtattaagctttttgaataattgt 267  Q
    |||||| || || |||||| ||||||| |||||||||||||||||||||||||    
T  54469490 atgttcgatgattacttagcatgtatgctgtattaagctttttgaataattgt 54469542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 11227878 - 11227920
Alignment:
Q  42 ccaaagattttgaaccaaggccaaatatttcagcttacggaga 84  Q
    |||||||||||||| ||||||| || |||||||||||||||||    
T  11227878 ccaaagattttgaatcaaggcccaacatttcagcttacggaga 11227920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 11228076 - 11228154
Alignment:
Q  6 acaatgatattgacaccaaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacggaga 84  Q
    |||||||||||||   |||||||||| ||  |||  | ||||||||||||||||| ||||| ||||||||||| |||||    
T  11228076 acaatgatattgatgtcaaggaaaagaagggagccactaaagattttgaaccaagaccaaacatttcagcttatggaga 11228154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 54459238 - 54459296
Alignment:
Q  26 gaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacggaga 84  Q
    |||||| ||||| | | |||||||||||||||||| || |||||||||||||| |||||    
T  54459238 gaaaagaagaaaccagtcaaagattttgaaccaagacccaatatttcagcttatggaga 54459296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 11240624 - 11240681
Alignment:
Q  23 aaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacg 80  Q
    ||||||||| ||||||  | ||||||||| |||||||| || ||||||||||||||||    
T  11240624 aaggaaaagaagaaagtcgtcaaagatttcgaaccaagacctaatatttcagcttacg 11240681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 11240936 - 11240997
Alignment:
Q  23 aaggaaaaggagaaagctgccaaagattttgaaccaaggccaaatatttcagcttacggaga 84  Q
    ||||||||| ||||||| | ||||||||| |||||||| || | ||||||||||| ||||||    
T  11240936 aaggaaaagaagaaagccgtcaaagatttcgaaccaagacctagtatttcagcttgcggaga 11240997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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