View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8990_low_6 (Length: 626)
Name: NF8990_low_6
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_low_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Complemental strand, 11231550 - 11230924
Alignment:
| Q |
1 |
tatcgcaacgagttatccatttctgtgtatgattctcaattttatgataatatttcacttgcatgttannnnnnnattgtactctttgtccatgatgcat |
100 |
Q |
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| T |
11231550 |
tatcgcaacgagttatccatttctgtgtatgattctcaattttatgataatatttcacttgcatgttatttttttattgtactctttgtccatgatgcat |
11231451 |
T |
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| Q |
101 |
gttgttaactctccgaagtaatgctcaattcaactaactgatatttacgnnnnnnnn-gccttcgtttttggtatcaacagtcacaaatatacaacagtc |
199 |
Q |
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| T |
11231450 |
gctgttaactctccgaagttatgctcaattcaactaactgatatttacgtttttttttgccttcgtttttggtatcaacagtcacaaatatacgacagtc |
11231351 |
T |
|
| Q |
200 |
gacaacaactttggtttccttcagctcttggcattcatgttcctcaacagattaggctagcacagcggatcacagacccggataccatggctagccattt |
299 |
Q |
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| T |
11231350 |
gacaacaactttggtttccttcagctcttggcattcatgttcctcaacagattaggctagcacagtggatcacagactcggataccatggctagccattt |
11231251 |
T |
|
| Q |
300 |
attcagtgtcacattgtggtttatttggaagggttggaaccaattgatttttaacaaaacacctttctgttgtgtccatcgctatggaggaatccagatt |
399 |
Q |
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| T |
11231250 |
attcggtgttacattgtggtttatttggaagggttggaaccaattgatttttaacaaaacacctttctggtgtgtccatcgctatggaggaatccagatt |
11231151 |
T |
|
| Q |
400 |
ttctgcagagttttttaacgctaatccctcaaagctgaagccaaccatagttttagagccagaaatcttggagcagccgaacattggcacgacaaggatc |
499 |
Q |
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| T |
11231150 |
ttccgcagagttttttaacgctaatccctcaaagccgaagccaaccatagtttcagagccagaaatcttggagcagccgaacattggcacaacaaggatc |
11231051 |
T |
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| Q |
500 |
aaagtagatgaaggatgttttcaaaatggcacaactggttacgttgcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttca |
599 |
Q |
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| T |
11231050 |
aaagtagatgaaggatgttttcaaaatggcacaactggttaggttgcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttca |
11230951 |
T |
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| Q |
600 |
cattagtcttagaccaacatacaatgt |
626 |
Q |
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| T |
11230950 |
cattagtcttagaccaacatacaatgt |
11230924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 445 - 626
Target Start/End: Complemental strand, 11243292 - 11243111
Alignment:
| Q |
445 |
catagttttagagccagaaatcttggagcagccgaacattggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttacgtt |
544 |
Q |
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| T |
11243292 |
catagtttcagagccagaaatctgggagtagccgaacgttggcacggcagagattaacatagatgcaggatgttttcaaaatggcacaactggttaggtt |
11243193 |
T |
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| Q |
545 |
gcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgt |
626 |
Q |
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| T |
11243192 |
gcttagcacgggatcacactgttttgttgtaatgctgcagtaaccaaaaattccgcattagtctcagaccaacatacaatgt |
11243111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 11243523 - 11243389
Alignment:
| Q |
11 |
agttatccatttctgtgtatgattctcaattttatgataatatttcacttgcatgttannnnnnnattgtactctttgtccatgatgcatgttgttaact |
110 |
Q |
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||||||||| ||||||||||||||||||||||| | ||| || ||||||||||||| | ||||||||||||||| ||||||||||| ||||||| |
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| T |
11243523 |
agttatccagttctgtgtatgattctcaattttctaatactaattcacttgcatgtgatttttt-attgtactctttgtcgatgatgcatgtcgttaact |
11243425 |
T |
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| Q |
111 |
ctccgaagtaatgctcaattcaactaactgatattt |
146 |
Q |
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| T |
11243424 |
ctcataagttatgctcaatttaattaactgatattt |
11243389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 287 - 539
Target Start/End: Complemental strand, 12919532 - 12919278
Alignment:
| Q |
287 |
tggctagccatttattcagtgtcacattgtggtttatttggaagggttggaaccaattgatttttaacaaaacacctttctgt--tgtgtccatcgctat |
384 |
Q |
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| T |
12919532 |
tggctagtcatttatccagtgttacactgtcgttgatttggaagggtcggaaccaattgattttcaataaaacaactttctgtcctgtatctactgcgaa |
12919433 |
T |
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| Q |
385 |
ggaggaatccagattttctgcagagttttttaacgctaatccctcaaagctgaagccaaccatagttttagagccagaaatcttggagcagccgaacatt |
484 |
Q |
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||| ||||| ||||||||||| ||||||| |||||||| | ||| ||||| | || ||||| ||| | ||||| || |||||| ||||| || |
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| T |
12919432 |
ggaaatatccaatttttctgcagaattttttattgctaatccgttgaagatgaagtctgtcagagtttcagaactagaaagctgggagcaaccgaatgtt |
12919333 |
T |
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| Q |
485 |
ggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggtt |
539 |
Q |
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||||| |||| |||||| ||||||| |||||| ||||||| ||| |||||||||| |
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| T |
12919332 |
ggcacaacaaagatcaatgtagatgcaggatgctttcaaactggtacaactggtt |
12919278 |
T |
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