View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8990_low_7 (Length: 615)
Name: NF8990_low_7
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 10 - 601
Target Start/End: Original strand, 10575962 - 10576553
Alignment:
| Q |
10 |
gacatcatgaactattgtaagctattaagttctgtgttgaatattgcatctgtgattaacataatcaccataaattatgttaatcagaacgtcttgtcct |
109 |
Q |
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| T |
10575962 |
gacatcatgaactattgtacgctattaagttctgtgttcaatattgcatctgtgattaacataatcaccataaattatgttaatcagaacttcttgtccc |
10576061 |
T |
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| Q |
110 |
aacgaagacccacatttttatagtgggtagctcttgccatgctatcttcatcataaattttgcatttattcacaaggatagaaaaacattagcatctcct |
209 |
Q |
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| T |
10576062 |
aaagaagacccacattcttatagtgagtagctcttgccatgctatcttcatcataaattttgcatttattcacaaggatagaaaaacattagcatctcct |
10576161 |
T |
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| Q |
210 |
ggtggccaatgaattgcatatgcaccattatagtgggacagaacatagactatttctcaaatttgactgcattgtcagctacgaacgtattcccttgctt |
309 |
Q |
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| T |
10576162 |
ggtggccaatgaattgcatatacaccattatagtgggacagaacatagactatttctcaaatttgactgcattgtcagctacgaacgtattcccttgctt |
10576261 |
T |
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| Q |
310 |
cagttcaaagacttccacttctacagcctctgcttccatattccggcgag-nnnnnnnccaccaatgttcaacctcttatgacaaaatgaaagcaccaaa |
408 |
Q |
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| T |
10576262 |
cagttcaaagacttccacttctacagcctctgcttccatattccggcgagttttttttccaccaatgttcaacctcttctgacaaaatgaaagcaccaaa |
10576361 |
T |
|
| Q |
409 |
ggaataacagaagatcttagtgtacaaaatgcgcaaaaggtgcagaatgttcaaaattttgaaggaaaaggaataacagaggagaggagaaaagagttct |
508 |
Q |
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| T |
10576362 |
ggaataacagaagatcttagtgtacaaaatgcgcaaaaggtgcagaatgttcagaattttgaaggaaaaggaataacagaggagaggagaaaagagttct |
10576461 |
T |
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| Q |
509 |
tgtcacaattcatgcatcctcatatatgcacccaattcaagtcacaaagcctctcaattgagagttagttagcctctggggaccctttgatgt |
601 |
Q |
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| T |
10576462 |
tgtcacaattcatgcatcctcatatatgcacccaattcaagtcacaaagcctctcaattgagagttagttagcctct-gggaccctttgatgt |
10576553 |
T |
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