View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8990_low_9 (Length: 447)
Name: NF8990_low_9
Description: NF8990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8990_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 52514709 - 52514290
Alignment:
| Q |
17 |
agactttagtgtggattcgttgcctgttataggacttggtgctgaatctatggattcagtagagagatcgtccaagttgggtttatgagcatcttcagga |
116 |
Q |
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| T |
52514709 |
agactttagtgtggattcattgcctgttataggacttggtgctgaatctatggattcagtagagagatcgtccaagttgggtttatgagcatcttcagga |
52514610 |
T |
|
| Q |
117 |
gagattgagaaagaagaaatgttagctagggaatggaataggattagatttttctatgaatatttttgaagttttattgcagttgaaactttgaggtagg |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52514609 |
gagatagagaaagaagaaatgttagctagggaatggaataggattagatttttctatgaatatttttgaagttttattgcagttgaaactttgaggtagg |
52514510 |
T |
|
| Q |
217 |
attgagttgcagtggttacttacttaagcacaattacagtgatcaactgggttttggcattttagtattcagtttaaggtgtttgttttggcttacttac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52514509 |
attgagttgcagtggttacttacttaagcacaattacagtgatcaactgggttttggcattttagtattcagtttaaggtgtttgttttggcttaattac |
52514410 |
T |
|
| Q |
317 |
aactatctaggccttcaggagcaatttggatttcccctatttgcaacaggatgctgaaacagatttccaccctccgatctctaaatggtcaagatatttt |
416 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52514409 |
aactatctaggccttcaggagcaatttggatttcctgtatttgcatcaggatgctgaaacagatttccaccctccgatctctaaatggtcaagatatttt |
52514310 |
T |
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| Q |
417 |
ataattaagttaactgatgt |
436 |
Q |
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|||||||||||||||||||| |
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| T |
52514309 |
ataattaagttaactgatgt |
52514290 |
T |
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