View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_high_18 (Length: 427)

Name: NF8991_high_18
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_high_18
NF8991_high_18
[»] chr4 (1 HSPs)
chr4 (18-427)||(31160468-31160876)
[»] chr8 (2 HSPs)
chr8 (348-420)||(32229927-32229999)
chr8 (64-137)||(13334812-13334885)
[»] chr6 (1 HSPs)
chr6 (345-410)||(21952551-21952616)
[»] chr3 (1 HSPs)
chr3 (69-163)||(52162963-52163055)
[»] chr5 (1 HSPs)
chr5 (348-410)||(33645908-33645970)
[»] chr2 (2 HSPs)
chr2 (345-410)||(8070964-8071029)
chr2 (344-393)||(33054937-33054986)
[»] chr7 (1 HSPs)
chr7 (227-256)||(42976576-42976605)
[»] chr1 (1 HSPs)
chr1 (227-267)||(4069588-4069628)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 31160876 - 31160468
Alignment:
Q  18 gttaagtgtgccttgctttgtggttttaacgcttacatttttgtgataacatgatgtaacatatacttttcttccttagttcttatctaatacttcttgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31160876 gttaagtgtgccttgctttgtggttttaacgcttacatttttgtgataacgtgatgtaacatatacttttcttccttagttcttatctaatacttcttgt 31160777  T
Q  118 tcttgagagactaagttttgggttgatatattctattttaacttcttcaaagnnnnnnnnnttaaggtatgtaatttaattttttgttggtcaactttg- 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||     
T  31160776 tcttgagagactaagttttgggttgatatattctattttaacttcttcaaa--aaaaaaaattaaggtatgtaatttaattttttgttggtcaactttgt 31160679  T
Q  217 nnnnnnnnnagtcaagtagtctagtaggtagaattcacctcttaaagtgaaataagttagatgttcggggttcaaaccatgacccctacgaagacaatca 316  Q
             |||||| |||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||  ||||    
T  31160678 tttttttttagtcaaatagtctggtaggtagaattcatctcttaaagtgaaataagctagatgttcggggttcaaaccatgacccctacgaggatgatca 31160579  T
Q  317 actttgtgtttagtgctaannnnnnnngttgagcaaagacaaacttaagtcatttcattaataatcaaagagtacaagtagtcagatacatcattaagaa 416  Q
    |||||||||||||||||||        |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31160578 actttgtgtttagtgctaatttttgttgttgagcaaagacaaacttaagccatttcattaataatcaaagagtacaagtagtcagatacatcattaagaa 31160479  T
Q  417 tatggtggcta 427  Q
    |||||||||||    
T  31160478 tatggtggcta 31160468  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 420
Target Start/End: Original strand, 32229927 - 32229999
Alignment:
Q  348 agcaaagacaaacttaagtcatttcattaataatcaaagagtacaagtagtcagatacatcattaagaatatg 420  Q
    |||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32229927 agcaaaggtaaacttaagccatttcattaataatcaaagagtacaagtagtcagatacatcattaaaaatatg 32229999  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 13334812 - 13334885
Alignment:
Q  64 taacatgatgtaacatatacttttcttccttagttcttatctaatacttcttgttcttgagagactaagttttg 137  Q
    ||||||||||||||  ||| ||||||||||||||| || ||||| |||||||||  | ||||||||||||||||    
T  13334812 taacatgatgtaactaatatttttcttccttagtttttctctaacacttcttgtgttggagagactaagttttg 13334885  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 410
Target Start/End: Complemental strand, 21952616 - 21952551
Alignment:
Q  345 ttgagcaaagacaaacttaagtcatttcattaataatcaaagagtacaagtagtcagatacatcat 410  Q
    |||||||||| |||||||||| |||||||||||| || |||||||||||||| || | ||||||||    
T  21952616 ttgagcaaaggcaaacttaagccatttcattaatgattaaagagtacaagtaatcgggtacatcat 21952551  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 52162963 - 52163055
Alignment:
Q  69 tgatgtaacatatacttttcttccttagttcttatctaatacttcttgttcttgagagactaagttttgggttgatatattctattttaacttct 163  Q
    ||||||||||||||||| ||||||||| ||||  ||| | | | ||||| ||||||||||||| ||||||  | ||||||||||||||| |||||    
T  52162963 tgatgtaacatatacttgtcttccttaattctcttctgacattccttgtgcttgagagactaacttttgg--ttatatattctattttatcttct 52163055  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 33645908 - 33645970
Alignment:
Q  348 agcaaagacaaacttaagtcatttcattaataatcaaagagtacaagtagtcagatacatcat 410  Q
    ||||||| |||||||| |||||||||||||| || |||||||||||||| || | ||||||||    
T  33645908 agcaaaggcaaacttaggtcatttcattaatgattaaagagtacaagtaatcgggtacatcat 33645970  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 8070964 - 8071029
Alignment:
Q  345 ttgagcaaagacaaacttaagtcatttcattaataatcaaagagtacaagtagtcagatacatcat 410  Q
    |||||||||| |||||||| | |||||||||||| || |||||||||||||| || | ||||||||    
T  8070964 ttgagcaaaggcaaacttaggccatttcattaatgattaaagagtacaagtaatcgggtacatcat 8071029  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 33054986 - 33054937
Alignment:
Q  344 gttgagcaaagacaaacttaagtcatttcattaataatcaaagagtacaa 393  Q
    ||||||||||||||| |||||| ||||||||||||||| ||||| |||||    
T  33054986 gttgagcaaagacaagcttaagccatttcattaataattaaagaatacaa 33054937  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 256
Target Start/End: Original strand, 42976576 - 42976605
Alignment:
Q  227 gtcaagtagtctagtaggtagaattcacct 256  Q
    ||||||||||||||||||||||||||||||    
T  42976576 gtcaagtagtctagtaggtagaattcacct 42976605  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 4069588 - 4069628
Alignment:
Q  227 gtcaagtagtctagtaggtagaattcacctcttaaagtgaa 267  Q
    ||||||||| ||||| ||||||||||||||||||| |||||    
T  4069588 gtcaagtagcctagtgggtagaattcacctcttaaggtgaa 4069628  T

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