View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_high_25 (Length: 297)
Name: NF8991_high_25
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 23705699 - 23705893
Alignment:
| Q |
1 |
ttcgccggagaaggcaaaccacaagacagtaactcgacccaaaagtggtttaggagaattgatcagatgtgttggtttagataggttattacattacata |
100 |
Q |
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| T |
23705699 |
ttcgccggagaaggcaaaccacaagacagtaactcgacccaaaagtggtttaggagaattgatcagatgtgttggtttagataggttattacattacata |
23705798 |
T |
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| Q |
101 |
agcatcctcattatgtgatttttacttacatggataacacaaggtcactactttagtcacccatcctttaattatgtgctttatttacacttttt |
195 |
Q |
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| T |
23705799 |
agcatcctcattatgtgatttttacttacatggataacacaaggtcactactttagtcacccatcctttaattatgtgctttatttacacttttt |
23705893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 23621036 - 23620961
Alignment:
| Q |
62 |
atcagatgtgttggtttagataggttattacattacataagcatcctcattatgtgatttttacttacatggataa |
137 |
Q |
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| T |
23621036 |
atcagatgtgttggtatagataggtttttacattacataagtatcctcattatgtgatttttacttacatggataa |
23620961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 23652381 - 23652306
Alignment:
| Q |
62 |
atcagatgtgttggtttagataggttattacattacataagcatcctcattatgtgatttttacttacatggataa |
137 |
Q |
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| T |
23652381 |
atcagatgtgttggtatagataggtttttacattacataagtatcctcattatgtgatttttacttacatggataa |
23652306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 23737815 - 23737740
Alignment:
| Q |
62 |
atcagatgtgttggtttagataggttattacattacataagcatcctcattatgtgatttttacttacatggataa |
137 |
Q |
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| T |
23737815 |
atcagatgtgttggtatagataggtttttacattacataagtatcctcattatgtgatttttacttacatggataa |
23737740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 282
Target Start/End: Original strand, 23705983 - 23706014
Alignment:
| Q |
251 |
catcctccacagttactcctggacattttgat |
282 |
Q |
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| T |
23705983 |
catcctccacagttactcctggacattttgat |
23706014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 52809557 - 52809489
Alignment:
| Q |
73 |
tggtttagataggttattacattacataagcatcctcattatgtgatttttacttacatggataacacaa |
142 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||| |||||| |||||| |||||||| |||| |
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| T |
52809557 |
tggtttagataggttattacattacataagtatcctc-ttatctgatttctacttatatggataatacaa |
52809489 |
T |
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