View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8991_high_31 (Length: 217)
Name: NF8991_high_31
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_high_31 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 33216581 - 33216756
Alignment:
| Q |
20 |
tcaaggctactgagttaagacttggtttacctggttctgaatcaccagagagagataatgatcttcttgaagnnnnnnntgcatactctttatgcatgct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33216581 |
tcaaggctactgagttaagacttggtttacctggttctgaatcaccagagagagataatgatcttcttgaagaaaaaaatgcatactctttatgcatgct |
33216680 |
T |
|
| Q |
120 |
taatagtttattttcaggtgcaaaaagaggtttttcagatgccattgatatgagaagaagttccaaccaacaaggt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33216681 |
taatagtttattttcaggtgcaaaaagaggtttttcagatgccattgatatgagaaaaagttccaaccaacaaggt |
33216756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University