View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_high_6 (Length: 679)
Name: NF8991_high_6
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 1 - 679
Target Start/End: Complemental strand, 7128730 - 7128052
Alignment:
| Q |
1 |
ctctagcttctgaatgttcaccataatttatctgcaatacaaaaaatcaccaaagtcgtcacatctgagttagataattatttcacaaaataaattaata |
100 |
Q |
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| T |
7128730 |
ctctagcttctgaatgttccccataatttatctgcaatacaaaaaatcaccaaagtcgtcacatctgagttagataattatttcacaaaataaattaata |
7128631 |
T |
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| Q |
101 |
atgaaagactcataaattcaaattattcgtttttacatgaacacgaacaatatcagtttttcatgttaccagacaagtacaacatcaagaaaacaggaag |
200 |
Q |
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| T |
7128630 |
atgaaagactcataaattcaaattattcgtttttacatgaacacgaacaatatcagtttttcatgttaccagacaagtacaacatcaagaaaacaggaag |
7128531 |
T |
|
| Q |
201 |
tcaatccttatgtaaactttacaaatttagagagaatataattcatatcaaacagaaaatcatagccattgtagcactgaaaattgatcgaatgtgtgtc |
300 |
Q |
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| T |
7128530 |
tcaatccttatgtaaactttaaaaaattagagagaatataatgcatatcaaacagaaaatcatagcctttgtagcactgataattgatcgaatgtgtgtc |
7128431 |
T |
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| Q |
301 |
gtgtcccacttgcatcaatgtttaataccgacacgacactgacgcatgtgataacatttaatttatgtcattttgtttgacttcttattatgacagttag |
400 |
Q |
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| T |
7128430 |
gtgtcccacttgcatcattgtttaataccgacacgacactgacgcatgtgataacatttaatttatgtcattttgcttgacttcttattatgacagttag |
7128331 |
T |
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| Q |
401 |
ggatagttatcatgtcagttgtgattatgggatatttaccgagtggcggctatgagagggagagaccaagctctagaattattgcaagggacagatcaag |
500 |
Q |
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| T |
7128330 |
ggatagttatcatgtcagttgtgattatgggatatttaccgagtggcggctatgagagggagagaccaagctctagaattattgcaagggacagatcaag |
7128231 |
T |
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| Q |
501 |
actattgaatttcttgactagtgtgtgtaaatgtttagaccatctctttcttggataacaacagactatcttaaaagtgaggcagataggaagcaaacaa |
600 |
Q |
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| T |
7128230 |
actattgaatttcttgactagcgtgtgtaaatgtttagaccatctctttcttggataacaacagactatcttaaaagtgaggcagataggaagcaaacaa |
7128131 |
T |
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| Q |
601 |
gatccaacggaagagatagacttttattagcaacaattccgtagattaaagtgatcagagagagagaaaaatgtacacg |
679 |
Q |
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| T |
7128130 |
gatccaacggaagagatagacttttattagcaacaattccgtagattaaagtgatcagagagagagaaaaatgtacacg |
7128052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 13218802 - 13218744
Alignment:
| Q |
458 |
gggagagaccaagctctagaattattgcaagggacagatcaagactattgaatttcttg |
516 |
Q |
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| T |
13218802 |
gggagagaccaagctctcgaattcttgcaagggagagacccaaactcttgaatttcttg |
13218744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 517
Target Start/End: Original strand, 27869374 - 27869435
Alignment:
| Q |
457 |
agggagagaccaagctctagaattattgcaagggacagat-caagactattgaatttcttga |
517 |
Q |
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| T |
27869374 |
agggagagaccaagctcttgaattcttggaagggagagatgcaagactctcgaatttcttga |
27869435 |
T |
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