View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_high_9 (Length: 591)
Name: NF8991_high_9
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 13 - 573
Target Start/End: Complemental strand, 52600894 - 52600316
Alignment:
| Q |
13 |
gagaaggcgaacaagatttttatgctggatacttgtgatcattctcacttctgctagaaattctctttctccttggtgagatttgtcaagagacaatttc |
112 |
Q |
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| T |
52600894 |
gagaaggcgaacaagatttttatgctggatgcttgtgatcattctcacttctgctagaaattctctttctccttggtgagatttgtcaagagacaatttc |
52600795 |
T |
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| Q |
113 |
ttacaagcaactagccttccatctgccaactttccctgtcaaaacacaagtagtcctcaataagtaagtgaatttatatgagccacaattaccaaaggta |
212 |
Q |
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| T |
52600794 |
ttacaagcaactagccttccatctgccaactttccctgtcaaaacacaagtagtcctcaataagtaagtgaatttatatgagccacaattaccaaaggta |
52600695 |
T |
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| Q |
213 |
gaaaactcaatttgatattatgtaatataatagtaacattggtgcatcatgattaagactttaagaattcaggttatcattgtcaggtcaaaattgtgta |
312 |
Q |
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| T |
52600694 |
gaaaactcaatttgatattatgtaatataatagtaacattggtgcatcatgattaagactttaagaattcaggttctcattgtcaggtcaaaattgtgta |
52600595 |
T |
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| Q |
313 |
tcaaagtaagtatcattagatttagtacctatattatacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtg |
412 |
Q |
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| T |
52600594 |
tcaaagtaagtatcattagatttagtacctatattatacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtg |
52600495 |
T |
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| Q |
413 |
gcttttctcaatgtctggaaatcaaagtagctaattgtcctaagattcccactaatgaactccatgaatcctgttatacatatagaa------------- |
499 |
Q |
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| T |
52600494 |
gcttttctcaatgtctggaaatcaaagtagctaattgtcctaagattcccactaatgaactccatgaatcctgttatacatatagaaacttcaacacaga |
52600395 |
T |
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| Q |
500 |
-----atttacaatgctatggtatatgtataatgtcaaatatacttcaactacctgactgttgattagttgggataatc |
573 |
Q |
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| T |
52600394 |
ttgatatttacaatgctatggtatatgtataatgtcaaatatacttcaactacctgactgttgattagttgggataatc |
52600316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 16912334 - 16912478
Alignment:
| Q |
14 |
agaaggcgaacaagatttttatgctggatacttgtgatcattctcacttctgctagaaattctctttctccttggtgagatttgtcaagagacaatttct |
113 |
Q |
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||||||||||| | |||||| || |||||||||||||||| | | || || || | |||||||||||||||||| |||||||||| |||||| ||| || |
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| T |
16912334 |
agaaggcgaaccaaatttttgtgttggatacttgtgatcaatttaacctcagccaaaaattctctttctccttgttgagatttgttaagagataatgcct |
16912433 |
T |
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| Q |
114 |
tacaagcaactagccttccatctgccaactttccctgtcaaaaca |
158 |
Q |
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| T |
16912434 |
taacagcaatgatccttccatcttccaactttccctatcaaaaca |
16912478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 477
Target Start/End: Original strand, 16912588 - 16912717
Alignment:
| Q |
348 |
atacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtggcttttctcaatgtctggaaatcaaagtagctaat |
447 |
Q |
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|||||| ||| ||||| ||||||||||||||||||||||||| || | ||| || ||||| || || ||||| |||||| |||||||||||||||| |
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| T |
16912588 |
ataccttatatacaggtccaaatccaccacttccaagaagatttccatgaaagaagttattggttgccttcctcaacgtctggtaatcaaagtagctaat |
16912687 |
T |
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| Q |
448 |
tgtcctaagattcccactaatgaactccat |
477 |
Q |
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| T |
16912688 |
agaccgaaggctcccactaaagaactccat |
16912717 |
T |
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