View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_low_1 (Length: 1165)

Name: NF8991_low_1
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_low_1
NF8991_low_1
[»] chr2 (17 HSPs)
chr2 (529-1160)||(21432309-21432938)
chr2 (677-1122)||(27099529-27099958)
chr2 (851-1160)||(27151439-27151751)
chr2 (19-195)||(21431856-21432032)
chr2 (889-1118)||(26988599-26988829)
chr2 (834-1100)||(27076449-27076727)
chr2 (889-1100)||(27027917-27028128)
chr2 (386-486)||(21432195-21432295)
chr2 (471-550)||(27100069-27100147)
chr2 (252-326)||(21432111-21432185)
chr2 (834-879)||(27027839-27027884)
chr2 (71-217)||(27077399-27077545)
chr2 (834-879)||(26988519-26988564)
chr2 (86-217)||(26987756-26987887)
chr2 (573-631)||(27099973-27100029)
chr2 (769-816)||(27151383-27151430)
chr2 (672-714)||(26988428-26988470)
[»] chr6 (3 HSPs)
chr6 (889-1118)||(34690675-34690905)
chr6 (834-879)||(34690595-34690640)
chr6 (672-714)||(34690504-34690546)
[»] chr7 (2 HSPs)
chr7 (105-252)||(30232862-30233010)
chr7 (71-195)||(30230113-30230237)
[»] chr4 (1 HSPs)
chr4 (73-216)||(50174655-50174798)


Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 529 - 1160
Target Start/End: Original strand, 21432309 - 21432938
Alignment:
Q  529 aagggagatggagtatttgaactg--agagttagaaataaggatttggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatag 626  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21432309 aagggagatggagtatttgaactgtgagagttagaaataaggatttggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatag 21432408  T
Q  627 ttgatgagcttgaagctgtaactaactaaatagtgaagagaagaggttgtaagtcagaattggaacactctagaaattagcactattgtatcattcttgg 726  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21432409 ttgatgagcttgaagctgtaactaactaaatagtgaatagaagaggttgtaagtcagaattggaacactctagaacttagcactattgtatcattcttgg 21432508  T
Q  727 gagagtatattgggaacttgcaaatttaaccctattgtatcgattttgctctcaggtgttgcaaatatcactataaatcctatttttattcgnnnnnnnn 826  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  21432509 gagagtat--tgggaacttgcaaatttaaccctattgtatcgattttgctctcaggtgttgcaaatatcactataaatcctatttttattcgtttttttt 21432606  T
Q  827 cttttctcctttgaactcttgttgtatcctatcatacacacaacccaactattctacatgatttaaatatggagatttttgtatgctcagggactaagac 926  Q
     | |||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21432607 ttcttctcctttgaactc--gttgtatcctatcatacacacaatccaactattctacatgatttaaatatggagatttttgtatgctcagggactaagac 21432704  T
Q  927 ttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtagaaagctttgcttggttctggacttagatcacacactgct 1026  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21432705 ttcatgaggaggaaatttctagagtgcgaagcttacacacacggaatttattaaaccgtagaaagctttgcttggttctggacttagatcacacactgct 21432804  T
Q  1027 aaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatgcaccattttata 1126  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21432805 aaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatgcaccattttata 21432904  T
Q  1127 gaagttttacttgatgcatttccccatctgtgct 1160  Q
    |||||||||||| |||||||||||||||||||||    
T  21432905 gaagttttacttaatgcatttccccatctgtgct 21432938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 677 - 1122
Target Start/End: Complemental strand, 27099958 - 27099529
Alignment:
Q  677 aagtcagaattggaacactctagaaattagcactattgtatcattcttgggagagtatattgggaacttgcaaatttaaccctattgtatcgattttgct 776  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| | |  ||||||              |||||||||| |||||||||    
T  27099958 aagtcagaattgggacactctagaatttagccctattgtatcattcttgggagattct--tgggaaa-------------cctattgtattgattttgct 27099874  T
Q  777 ctcaggtgttgcaaatatcactataaatcctatttttattcgnnnnnnnncttttctcctttgaactcttgttgtatcctatcatacacacaacccaact 876  Q
    ||||||| |||||||||||||||||||||||||||||||||          | ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  27099873 ctcaggtcttgcaaatatcactataaatcctatttttattcaatttttta-tcttctcctttgaacgcttgttgtatcctatcatacacacaatccaact 27099775  T
Q  877 attctacatgatttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaattta 976  Q
    |||||||||||||||||||||||||||||  |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  27099774 attctacatgatttaaatatggagattttcatatgttcagggactaagacttcatgatgaggaaatttctagagtgcgcagcttacacacacggaattta 27099675  T
Q  977 ttaaactgtagaaagctttgcttggttctggacttagatcacacactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaa 1076  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||| |||| |||||||||| || ||||    
T  27099674 ttaaaccgtagaaagctttgcttggttctggacttagatcacacacagataaataccacttcccttcatcctttgaacccaaaagaaatgcaattgaaaa 27099575  T
Q  1077 cctgtacagattctctagaaggtatgtgccaaccaatgcaccattt 1122  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  27099574 cctatacagattctctagaaggtatgtgccaactaatgcaccattt 27099529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 851 - 1160
Target Start/End: Original strand, 27151439 - 27151751
Alignment:
Q  851 tatcctatcatacacacaacccaactattctacatgatttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagag 950  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |||||    
T  27151439 tatcctatcatacacacaatccaactattctacatgatttaaatatggagatttttgtatgttcagggactaagacttcacgatgaggaaatttgtagag 27151538  T
Q  951 tgcgcagcttacacacacggaatttattaaactgtagaaagctttgcttgg---ttctggacttagatcacacactgctaaataccacttctcttcatcg 1047  Q
    || |||||||| |||||| ||||||| |||||  |||||||||||||||||   |||||| | |||||||||||||||||||||||||| | |||||||     
T  27151539 tgtgcagcttagacacacagaattta-taaaccatagaaagctttgcttggttattctgggcctagatcacacactgctaaataccactccccttcatca 27151637  T
Q  1048 tttgag-cccagaagaaatgcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatgcaccattttatagaagttttacttgatgcatt 1146  Q
    |||||| ||||||||||||||||||||||| || |||||||||||||||| |||| ||||| | |||||||||||||||| |||||||||||||||||||    
T  27151638 tttgagccccagaagaaatgcatttaaaaatctatacagattctctagaaagtatatgccaccgaatgcaccattttataaaagttttacttgatgcatt 27151737  T
Q  1147 tccccatctgtgct 1160  Q
    ||||||||| ||||    
T  27151738 tccccatctctgct 27151751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 21431856 - 21432032
Alignment:
Q  19 attgatagttagattgttcaaattttgcaacttgatgggtcggtttctaaatttgcagtgtcatccatgaatgtagatttatgtcggcatcctggctcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21431856 attgatagttagattgttcaaattttgcaacttgatgggtcggtttcgaaatttgcagtgtcatccatgaatgtagatttatgccggcatcctggctcat 21431955  T
Q  119 ttgaatgcttgtgtatacgttgtgggaaaaagatcgatggtgattctggtttgacatttggatacatacacaaggta 195  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21431956 ttgaatgcttgtgtatacgttgtgggcaaaagatcgatggtgattctggtttgacatttggatacatacacaaggta 21432032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 889 - 1118
Target Start/End: Original strand, 26988599 - 26988829
Alignment:
Q  889 ttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtaga 988  Q
    ||||||||||| ||||||||||| ||||||||||| |||| | ||  |||||||||||||||||||||||  | ||     ||||||||||||  |||||    
T  26988599 ttaaatatggaaatttttgtatgttcagggactaaaacttgatgataaggaaatttctagagtgcgcagcagagacgtgaagaatttattaaatcgtaga 26988698  T
Q  989 aagctttgcttggttctggacttagatcacacactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagatt 1088  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  26988699 aagctttgcttggttctagacttagatcacacactgctaaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagatt 26988798  T
Q  1089 ctctagaaggt-atgtgccaaccaatgcacc 1118  Q
    ||||||||||| || |||||||| |||||||    
T  26988799 ctctagaaggtaatatgccaaccgatgcacc 26988829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 834 - 1100
Target Start/End: Complemental strand, 27076727 - 27076449
Alignment:
Q  834 cctttgaactcttgttgtatcctatcatacacacaacccaactatt----ctacatgattta--------aatatggagatttttgtatgctcagggact 921  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    || ||| |||||        ||||||||||||||||| |  |||||||||    
T  27076727 cctttgaattcttgttgtatcctatcatacacacaacccaattatttattctgcataatttagccaaataaatatggagatttttgtgttttcagggact 27076628  T
Q  922 aagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtagaaagctttgcttggttctggacttagatcacaca 1021  Q
    || |||| | ||  |||||||||||||||||||| || || ||     ||||||||||||  ||||||||||||| |||||||| ||| |||||||||||    
T  27076627 aaaacttgatgataaggaaatttctagagtgcgcggcatagacgtgaagaatttattaaatcgtagaaagctttgtttggttctagacctagatcacaca 27076528  T
Q  1022 ctgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggta 1100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  27076527 ctgctaaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaactcatacagattctctagaaggta 27076449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 889 - 1100
Target Start/End: Original strand, 27027917 - 27028128
Alignment:
Q  889 ttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtaga 988  Q
    ||||||||||||||||||||||  ||||||||||| |||| | ||  ||||||||||||||||||||  | || ||     ||||||||||||  |||||    
T  27027917 ttaaatatggagatttttgtattttcagggactaaaacttgatgataaggaaatttctagagtgcgcgacatagacgtgaagaatttattaaatcgtaga 27028016  T
Q  989 aagctttgcttggttctggacttagatcacacactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagatt 1088  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||| |||||||||||||||||||||||  ||||||||    
T  27028017 aagctttgtttggttctggacctagatcacacactgctaaataccacttttctttaccgtttgagctcagaagaaatgcatttaaaaacccatacagatt 27028116  T
Q  1089 ctctagaaggta 1100  Q
    ||||||||||||    
T  27028117 ctctagaaggta 27028128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 386 - 486
Target Start/End: Original strand, 21432195 - 21432295
Alignment:
Q  386 tcatgaatgatgtcgtaagatacgaccttatttcagcaagtttgttctactattttttatgatatcctcatattttgcagaaactcggaagaacacctag 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21432195 tcatgaatgatgtcgtaagatacgaccttatttcagcaagtttgttctactattttttatgatatcctcatattttgcagaaactcggaagaacacctag 21432294  T
Q  486 a 486  Q
    |    
T  21432295 a 21432295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 27100147 - 27100069
Alignment:
Q  471 cggaagaacacctagaccactggagcaaggtgttgttattgttgtgtgaatttgcagtaagggagatggagtatttgaac 550  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||    
T  27100147 cggaagaacacctagaccactggagcaaggtgttg-tattgtcgtgtgaatttgcagcaatggagatggagtatttgaac 27100069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 252 - 326
Target Start/End: Original strand, 21432111 - 21432185
Alignment:
Q  252 tattcctatctattgtgatgagttctcacatatacaactttctagagaatgtaatctctcacgaggtctattagg 326  Q
    ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |||  ||||||||||||    
T  21432111 tattcgtatctattgtgattagttctcacatatacaacattctagagaatgtaatctgtcattaggtctattagg 21432185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 834 - 879
Target Start/End: Original strand, 27027839 - 27027884
Alignment:
Q  834 cctttgaactcttgttgtatcctatcatacacacaacccaactatt 879  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  27027839 cctttgaattcttgttgtatcctatcatacacacaacccaactatt 27027884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 27077545 - 27077399
Alignment:
Q  71 ttgcagtgtcatccatgaatgtagatttatgtcggcatcctggctcatttgaatgcttgtgtatacgttgtgggaaaaagatcgatggtgattctggttt 170  Q
    |||||||||||||  ||||||||||| ||||   ||| ||||| ||||||| | || | ||||||| ||||||| ||||| | ||||| || |||||| |    
T  27077545 ttgcagtgtcatctgtgaatgtagatgtatgcatgcaccctggatcatttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgt 27077446  T
Q  171 gacatttggatacatacacaaggtacacattatttctaataattatc 217  Q
    | ||||||| || || | ||||||||| ||| |||||||| ||||||    
T  27077445 gtcatttgggtatattcgcaaggtacaaattgtttctaatgattatc 27077399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 834 - 879
Target Start/End: Original strand, 26988519 - 26988564
Alignment:
Q  834 cctttgaactcttgttgtatcctatcatacacacaacccaactatt 879  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||    
T  26988519 cctttgaattcttgttgtatcctatcatatacacaacccaactatt 26988564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 26987756 - 26987887
Alignment:
Q  86 tgaatgtagatttatgtcggcatcctggctcatttgaatgcttgtgtatacgttgtgggaaaaagatcgatggtgattctggtttgacatttggatacat 185  Q
    |||||||||||  ||||  ||||||||| ||||||| | || | ||||||| ||||||  ||||| | ||||| || |||||| || ||||||| || ||    
T  26987756 tgaatgtagatggatgtatgcatcctggatcatttggaggcatttgtatacattgtggacaaaaggtggatggggaatctggtgtgtcatttgggtatat 26987855  T
Q  186 acacaaggtacacattatttctaataattatc 217  Q
    ||| ||||||||  || |||||||| ||||||    
T  26987856 acataaggtacaatttttttctaatgattatc 26987887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 573 - 631
Target Start/End: Complemental strand, 27100029 - 27099973
Alignment:
Q  573 ggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatagttgat 631  Q
    ||||||||||| |||||||||||||||||  |  |||||||||||| ||||||||||||    
T  27100029 ggtgctgaattacttaagagattagctct--agggagggaaatgtaattaatagttgat 27099973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 769 - 816
Target Start/End: Original strand, 27151383 - 27151430
Alignment:
Q  769 attttgctctcaggtgttgcaaatatcactataaatcctatttttatt 816  Q
    ||||| ||||||||| ||| |||||| |||||||||||||||||||||    
T  27151383 attttactctcaggtcttggaaatattactataaatcctatttttatt 27151430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 672 - 714
Target Start/End: Original strand, 26988428 - 26988470
Alignment:
Q  672 gttgtaagtcagaattggaacactctagaaattagcactattg 714  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||    
T  26988428 gttgtaagtcagaattgggacaatctagaatttagcactattg 26988470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 2e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 889 - 1118
Target Start/End: Original strand, 34690675 - 34690905
Alignment:
Q  889 ttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtaga 988  Q
    ||||||||||| ||||||||||| ||||||||||| |||| | ||  |||||||||||||||||||||||  | ||     ||||||||||||  |||||    
T  34690675 ttaaatatggaaatttttgtatgttcagggactaaaacttgatgataaggaaatttctagagtgcgcagcagagacgtgaagaatttattaaatcgtaga 34690774  T
Q  989 aagctttgcttggttctggacttagatcacacactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagatt 1088  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  34690775 aagctttgcttggttcttgacttagatcacacactgctaaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagatt 34690874  T
Q  1089 ctctagaaggt-atgtgccaaccaatgcacc 1118  Q
    ||||||||||| || |||||||| |||||||    
T  34690875 ctctagaaggtaatatgccaaccgatgcacc 34690905  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 834 - 879
Target Start/End: Original strand, 34690595 - 34690640
Alignment:
Q  834 cctttgaactcttgttgtatcctatcatacacacaacccaactatt 879  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||    
T  34690595 cctttgaattcttgttgtatcctatcatatacacaacccaactatt 34690640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 672 - 714
Target Start/End: Original strand, 34690504 - 34690546
Alignment:
Q  672 gttgtaagtcagaattggaacactctagaaattagcactattg 714  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||    
T  34690504 gttgtaagtcagaattgggacagtctagaatttagcactattg 34690546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 30232862 - 30233010
Alignment:
Q  105 gcatcctggctcatttgaatgcttgtgtatacgttgtgggaaaaagatcgatggtgattctggtttgacatttggatacatacacaaggtacacattatt 204  Q
    ||||||||| ||||||| | || | ||||||| ||||||| ||||| | ||||| || |||||| ||  |||||| || |||||||||||||| ||| ||    
T  30232862 gcatcctggatcatttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgtgttatttggctatatacacaaggtacaaattgtt 30232961  T
Q  205 tctaataattatcaactgg-tactaacaatttagatttggataattgtt 252  Q
    |||||| ||||||    || |||||| |||||||||||||||| |||||    
T  30232962 tctaatgattatcttggggatactaataatttagatttggatagttgtt 30233010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 30230113 - 30230237
Alignment:
Q  71 ttgcagtgtcatccatgaatgtagatttatgtcggcatcctggctcatttgaatgcttgtgtatacgttgtgggaaaaagatcgatggtgattctggttt 170  Q
    ||||||| |||||  |||||||||||  ||||  ||||||||| ||||||| | || | ||||||| ||||||| ||||| | ||||| || |||||| |    
T  30230113 ttgcagtatcatctgtgaatgtagatggatgtacgcatcctggatcatttggaggcatttgtatacattgtgggcaaaaggttgatggggaatctggtgt 30230212  T
Q  171 gacatttggatacatacacaaggta 195  Q
    | | ||||| || ||||||||||||    
T  30230213 gtcgtttgggtatatacacaaggta 30230237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 50174798 - 50174655
Alignment:
Q  73 gcagtgtcatccatgaatgtagatttatgtcggcatcctggctcatttgaatgcttgtgtatacgttgtgggaaaaagatcgatggtgattctggtttga 172  Q
    |||| ||||||| |||| |||||| |||||   |||||||| ||||||| |    ||||||||||||| ||| ||||| | ||||| || |||||  |||    
T  50174798 gcagagtcatccgtgaaggtagatgtatgtacacatcctggttcatttggagagatgtgtatacgttgcgggcaaaagttggatggggaatctggcgtga 50174699  T
Q  173 catttggatacatacacaaggtacacattatttctaataattat 216  Q
    ||||||| ||||||||||||||| ||||| ||||| || |||||    
T  50174698 catttgggtacatacacaaggtatacattgtttctgatgattat 50174655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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