View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_low_10 (Length: 756)

Name: NF8991_low_10
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_low_10
NF8991_low_10
[»] chr7 (2 HSPs)
chr7 (18-373)||(30505637-30505992)
chr7 (435-509)||(30506052-30506126)
[»] chr4 (4 HSPs)
chr4 (211-373)||(1541059-1541221)
chr4 (211-373)||(1545357-1545519)
chr4 (435-509)||(1545221-1545295)
chr4 (435-509)||(1540923-1540997)
[»] chr1 (6 HSPs)
chr1 (211-373)||(26400692-26400854)
chr1 (211-373)||(26404990-26405152)
chr1 (199-373)||(28914335-28914509)
chr1 (435-514)||(28914194-28914273)
chr1 (435-509)||(26404854-26404928)
chr1 (435-509)||(26400556-26400630)
[»] chr6 (4 HSPs)
chr6 (211-373)||(7033761-7033923)
chr6 (211-373)||(7038061-7038223)
chr6 (435-509)||(7033625-7033699)
chr6 (435-509)||(7037925-7037999)
[»] chr5 (4 HSPs)
chr5 (211-373)||(17793181-17793343)
chr5 (211-373)||(17797479-17797641)
chr5 (435-509)||(17793045-17793119)
chr5 (435-509)||(17797343-17797417)


Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 30505637 - 30505992
Alignment:
Q  18 taactttggtttcgagcaactaagattttgtaaccactaacttaataaattcatcaccctaaaagaaataagaactattattacagaggggatatatgaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30505637 taactttggtttcgagcaactaagattttgtaaccactaacttaataaattcatcaccctaaaagaaataagaactattattatagaggggatatatgaa 30505736  T
Q  118 acggtttcgtgactaaggtgtggagtagtaaaggaatgaagatacggaggggtcaacggttccatctgcgtgctcaacatagaaactgttgttattttgt 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505737 acggtttcgtgactagggtgtggagtagtaaaggaatgaagatacggaggggtcaacggttccatctgcgtgctcaacatagaaactgttgttattttgt 30505836  T
Q  218 aaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaactcaaacttacaaatagagaagtacagaata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||    
T  30505837 aaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacgtacaaatagaaaagtacagaata 30505936  T
Q  318 gaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505937 gaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 30505992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 435 - 509
Target Start/End: Original strand, 30506052 - 30506126
Alignment:
Q  435 atatttaaaatattcaaaacagaagtaaaataaactccgtagacgtggcagcagttctaaacacagtagctaaca 509  Q
    |||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  30506052 atatttaaaagattcaaaacagaagtaaaataaactctgcagacgtggcagcagttctaaacacaatagctaaca 30506126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 211 - 373
Target Start/End: Complemental strand, 1541221 - 1541059
Alignment:
Q  211 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaactcaaacttacaaatagagaagta 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | |||||| |||||| |||||||||| |||||    
T  1541221 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta 1541122  T
Q  311 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 373  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  1541121 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 1541059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 211 - 373
Target Start/End: Complemental strand, 1545519 - 1545357
Alignment:
Q  211 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaactcaaacttacaaatagagaagta 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  ||| | |||||| |||||| |||||||||| |||||    
T  1545519 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaaaagtaaatttcttattcaattcaaacgtacaaatagaaaagta 1545420  T
Q  311 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 373  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  1545419 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 1545357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 1545295 - 1545221
Alignment:
Q  435 atatttaaaatattcaaaacagaagtaaaataaactccgtagacgtggcagcagttctaaacacagtagctaaca 509  Q
    |||||||||||||||||||||||| |||||| ||||| | | ||||||||||||||||||||||| ||| |||||    
T  1545295 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 1545221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 1540997 - 1540923
Alignment:
Q  435 atatttaaaatattcaaaacagaagtaaaataaactccgtagacgtggcagcagttctaaacacagtagctaaca 509  Q
    ||||||||||||||||||| |||| |||||| |||||   | ||||||||||||||||||||||| ||| |||||    
T  1540997 atatttaaaatattcaaaatagaattaaaatgaactcaacaaacgtggcagcagttctaaacacaatagttaaca 1540923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 211 - 373
Target Start/End: Complemental strand, 26400854 - 26400692
Alignment:
Q  211 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaactcaaacttacaaatagagaagta 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | |||||| |||||| |||||||||| |||||    
T  26400854 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta 26400755  T
Q  311 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 373  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  26400754 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 26400692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 211 - 373
Target Start/End: Complemental strand, 26405152 - 26404990
Alignment:
Q  211 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaactcaaacttacaaatagagaagta 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | |||||| |||||| |||||||||| |||||    
T  26405152 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta 26405053  T
Q  311 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 373  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  26405052 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 26404990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 199 - 373
Target Start/End: Complemental strand, 28914509 - 28914335
Alignment:
Q  199 gaaactgttgttattttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaactcaaacttaca 298  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   || | |||||| |||||| ||||    
T  28914509 gaaactgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaaattcttattcaattcaaacgtaca 28914410  T
Q  299 aatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 373  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  28914409 aatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 28914335  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 435 - 514
Target Start/End: Complemental strand, 28914273 - 28914194
Alignment:
Q  435 atatttaaaatattcaaaacagaagtaaaataaactccgtagacgtggcagcagttctaaacacagtagctaacaaaaac 514  Q
    |||||||||||||||||||||||| |||||| ||||| | | ||||||||||||||||||||||| ||| ||||| ||||    
T  28914273 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaacagaaac 28914194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 26404928 - 26404854
Alignment:
Q  435 atatttaaaatattcaaaacagaagtaaaataaactccgtagacgtggcagcagttctaaacacagtagctaaca 509  Q
    |||||||||||||||||||||||| |||||| ||||| | | ||||||||||||||||||||||| ||| |||||    
T  26404928 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 26404854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 26400630 - 26400556
Alignment:
Q  435 atatttaaaatattcaaaacagaagtaaaataaactccgtagacgtggcagcagttctaaacacagtagctaaca 509  Q
    ||||||||||||||||||| |||| |||||| ||||| | | ||||||||||||||||||||||| ||| |||||    
T  26400630 atatttaaaatattcaaaatagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 26400556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 5e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 211 - 373
Target Start/End: Complemental strand, 7033923 - 7033761
Alignment:
Q  211 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaactcaaacttacaaatagagaagta 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  ||| | |||||| |||||| |||||||||| |||||    
T  7033923 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaaaagtaaatttcttattcaattcaaacgtacaaatagaaaagta 7033824  T
Q  311 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 373  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  7033823 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 7033761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 211 - 373
Target Start/End: Complemental strand, 7038223 - 7038061
Alignment:
Q  211 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaactcaaacttacaaatagagaagta 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | |||||| |||||| |||||||||| |||||    
T  7038223 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta 7038124  T
Q  311 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 373  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||    
T  7038123 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacaatagaatact 7038061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 7033699 - 7033625
Alignment:
Q  435 atatttaaaatattcaaaacagaagtaaaataaactccgtagacgtggcagcagttctaaacacagtagctaaca 509  Q
    |||||||||||||||||||||||| |||||| ||||| | | ||||||||||||||||||||||| ||| |||||    
T  7033699 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 7033625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 7037999 - 7037925
Alignment:
Q  435 atatttaaaatattcaaaacagaagtaaaataaactccgtagacgtggcagcagttctaaacacagtagctaaca 509  Q
    |||||||||||||||||||||||| |||||| ||||| | | ||||||||||||||||||||||| ||| |||||    
T  7037999 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 7037925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 5e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 211 - 373
Target Start/End: Complemental strand, 17793343 - 17793181
Alignment:
Q  211 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaactcaaacttacaaatagagaagta 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | |||||| |||||| |||||||||| |||||    
T  17793343 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttgttattcaattcaaacgtacaaatagaaaagta 17793244  T
Q  311 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 373  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  17793243 cagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 17793181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 211 - 373
Target Start/End: Complemental strand, 17797641 - 17797479
Alignment:
Q  211 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaactcaaacttacaaatagagaagta 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | |||||| |||||| |||||||||| |||||    
T  17797641 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttgttattcaattcaaacgtacaaatagaaaagta 17797542  T
Q  311 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 373  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  17797541 cagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 17797479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 17793119 - 17793045
Alignment:
Q  435 atatttaaaatattcaaaacagaagtaaaataaactccgtagacgtggcagcagttctaaacacagtagctaaca 509  Q
    |||||||||||||||||||||||| |||||| ||||| | | ||||||||||||||||||||||| ||| |||||    
T  17793119 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 17793045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 17797417 - 17797343
Alignment:
Q  435 atatttaaaatattcaaaacagaagtaaaataaactccgtagacgtggcagcagttctaaacacagtagctaaca 509  Q
    |||||||||||||||||||||||| |||||| ||||| | | ||||||||||||||||||||||| ||| |||||    
T  17797417 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 17797343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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