View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_low_11 (Length: 720)

Name: NF8991_low_11
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_low_11
NF8991_low_11
[»] chr1 (26 HSPs)
chr1 (14-703)||(15396722-15397413)
chr1 (540-681)||(38520626-38520768)
chr1 (618-681)||(14545445-14545508)
chr1 (568-688)||(50272225-50272346)
chr1 (569-669)||(7997663-7997763)
chr1 (626-681)||(3871342-3871397)
chr1 (569-671)||(27872615-27872717)
chr1 (569-681)||(33291510-33291624)
chr1 (569-669)||(30818451-30818550)
chr1 (618-681)||(5324650-5324713)
chr1 (618-681)||(34519058-34519121)
chr1 (625-684)||(44637354-44637413)
chr1 (569-660)||(45805923-45806014)
chr1 (569-693)||(18569390-18569515)
chr1 (618-693)||(25406364-25406440)
chr1 (569-669)||(25728064-25728164)
chr1 (618-681)||(28035064-28035128)
chr1 (569-669)||(30878951-30879051)
chr1 (569-669)||(50148248-50148348)
chr1 (569-681)||(51871740-51871852)
chr1 (618-669)||(5701182-5701233)
chr1 (618-669)||(35584726-35584777)
chr1 (618-669)||(45426167-45426218)
chr1 (618-660)||(20266227-20266269)
chr1 (618-655)||(19716016-19716053)
chr1 (569-681)||(51868737-51868850)
[»] chr2 (25 HSPs)
chr2 (571-681)||(4192717-4192827)
chr2 (569-681)||(3725057-3725169)
chr2 (569-669)||(30420553-30420653)
chr2 (569-681)||(32913118-32913230)
chr2 (635-703)||(36323801-36323869)
chr2 (618-693)||(8805792-8805867)
chr2 (570-660)||(21570522-21570612)
chr2 (596-681)||(40626120-40626205)
chr2 (569-681)||(3270321-3270433)
chr2 (569-681)||(8971719-8971833)
chr2 (618-681)||(22421661-22421724)
chr2 (618-681)||(27477080-27477143)
chr2 (618-693)||(32197875-32197950)
chr2 (567-681)||(45128078-45128193)
chr2 (568-669)||(27249256-27249357)
chr2 (569-681)||(2808564-2808675)
chr2 (618-681)||(6173557-6173621)
chr2 (625-681)||(40660024-40660080)
chr2 (618-669)||(31581825-31581875)
chr2 (618-669)||(34598913-34598963)
chr2 (569-660)||(36233881-36233972)
chr2 (618-669)||(42949640-42949691)
chr2 (569-693)||(459354-459479)
chr2 (635-684)||(9374645-9374694)
chr2 (543-648)||(24587564-24587669)
[»] chr7 (24 HSPs)
chr7 (569-681)||(433784-433897)
chr7 (569-681)||(20116455-20116567)
chr7 (569-681)||(23425464-23425576)
chr7 (569-681)||(45199124-45199236)
chr7 (569-681)||(35667324-35667436)
chr7 (618-681)||(48207823-48207886)
chr7 (618-669)||(5546280-5546331)
chr7 (569-660)||(46821886-46821977)
chr7 (568-669)||(2843332-2843433)
chr7 (569-681)||(22927962-22928075)
chr7 (569-681)||(26492237-26492350)
chr7 (569-681)||(42311152-42311265)
chr7 (569-693)||(36143738-36143862)
chr7 (615-655)||(42067179-42067219)
chr7 (618-681)||(1448922-1448985)
chr7 (618-681)||(1485349-1485412)
chr7 (635-690)||(43369849-43369904)
chr7 (569-660)||(46338925-46339016)
chr7 (618-660)||(3860873-3860915)
chr7 (618-660)||(21266313-21266355)
chr7 (619-693)||(32522007-32522081)
chr7 (618-660)||(32684606-32684648)
chr7 (569-693)||(6001893-6002018)
chr7 (636-681)||(17223091-17223136)
[»] chr6 (15 HSPs)
chr6 (569-681)||(33109706-33109818)
chr6 (569-681)||(17237377-17237489)
chr6 (615-681)||(4468477-4468543)
chr6 (569-681)||(23947410-23947522)
chr6 (569-660)||(7876159-7876250)
chr6 (569-660)||(7881217-7881308)
chr6 (567-681)||(8196499-8196614)
chr6 (569-660)||(12652812-12652903)
chr6 (618-660)||(13436708-13436750)
chr6 (569-669)||(8496837-8496937)
chr6 (625-669)||(17334703-17334747)
chr6 (569-669)||(25064107-25064207)
chr6 (618-669)||(8028223-8028274)
chr6 (618-655)||(4984697-4984734)
chr6 (618-655)||(33740697-33740734)
[»] chr5 (24 HSPs)
chr5 (621-681)||(27751853-27751913)
chr5 (567-681)||(781262-781376)
chr5 (569-681)||(7887030-7887142)
chr5 (569-696)||(16981165-16981292)
chr5 (618-681)||(30298132-30298195)
chr5 (615-681)||(35475429-35475495)
chr5 (618-680)||(36344583-36344645)
chr5 (572-669)||(7150440-7150537)
chr5 (568-669)||(27266965-27267066)
chr5 (569-681)||(19281037-19281149)
chr5 (569-669)||(30371599-30371699)
chr5 (618-693)||(27576430-27576505)
chr5 (618-655)||(21060400-21060437)
chr5 (622-671)||(35631793-35631842)
chr5 (569-669)||(10649328-10649428)
chr5 (569-669)||(18677571-18677671)
chr5 (569-669)||(20257799-20257899)
chr5 (626-658)||(28097084-28097116)
chr5 (618-669)||(2057943-2057994)
chr5 (618-681)||(19259903-19259969)
chr5 (618-669)||(26578173-26578224)
chr5 (618-669)||(34881633-34881683)
chr5 (569-681)||(7241657-7241770)
chr5 (569-681)||(7246833-7246946)
[»] chr4 (23 HSPs)
chr4 (569-681)||(31381764-31381876)
chr4 (618-681)||(37188686-37188748)
chr4 (569-681)||(34024529-34024641)
chr4 (618-681)||(8009453-8009515)
chr4 (546-681)||(10359639-10359775)
chr4 (569-669)||(20569136-20569236)
chr4 (618-681)||(21090086-21090149)
chr4 (618-693)||(32952828-32952902)
chr4 (554-669)||(43444263-43444377)
chr4 (618-669)||(47416817-47416868)
chr4 (570-669)||(50766614-50766713)
chr4 (618-681)||(51317919-51317982)
chr4 (569-693)||(35965055-35965180)
chr4 (618-669)||(25273813-25273864)
chr4 (618-669)||(29965567-29965618)
chr4 (618-669)||(43154126-43154177)
chr4 (618-669)||(53616756-53616807)
chr4 (569-655)||(2115707-2115793)
chr4 (569-655)||(9528997-9529083)
chr4 (597-655)||(38706829-38706887)
chr4 (619-660)||(1531841-1531882)
chr4 (569-670)||(10389857-10389958)
chr4 (636-693)||(21554889-21554946)
[»] chr8 (16 HSPs)
chr8 (618-680)||(44100026-44100088)
chr8 (569-681)||(11725561-11725673)
chr8 (558-681)||(35580326-35580449)
chr8 (569-681)||(11196771-11196881)
chr8 (569-660)||(9072596-9072687)
chr8 (618-681)||(19876140-19876203)
chr8 (569-655)||(9619477-9619563)
chr8 (575-660)||(14907038-14907123)
chr8 (626-693)||(15597247-15597314)
chr8 (626-681)||(27747205-27747260)
chr8 (569-660)||(43890239-43890330)
chr8 (618-660)||(2655797-2655839)
chr8 (569-655)||(9498721-9498806)
chr8 (627-697)||(31013684-31013753)
chr8 (618-660)||(32724603-32724645)
chr8 (625-681)||(34611739-34611796)
[»] chr3 (19 HSPs)
chr3 (568-693)||(14464376-14464504)
chr3 (569-681)||(29503332-29503444)
chr3 (570-649)||(36735277-36735356)
chr3 (572-655)||(36905994-36906077)
chr3 (571-681)||(39917489-39917599)
chr3 (569-669)||(3850560-3850660)
chr3 (569-669)||(25631632-25631732)
chr3 (570-693)||(46178447-46178571)
chr3 (618-681)||(38440670-38440733)
chr3 (569-681)||(2342362-2342474)
chr3 (597-681)||(4172464-4172549)
chr3 (569-681)||(4178434-4178547)
chr3 (569-669)||(35499306-35499407)
chr3 (569-669)||(44907504-44907604)
chr3 (625-681)||(49552316-49552372)
chr3 (618-681)||(50611509-50611573)
chr3 (618-669)||(32607386-32607437)
chr3 (569-655)||(46934512-46934598)
chr3 (618-655)||(17237721-17237758)
[»] scaffold0014 (1 HSPs)
scaffold0014 (618-681)||(201464-201527)
[»] scaffold0311 (1 HSPs)
scaffold0311 (596-681)||(8619-8704)
[»] scaffold0002 (1 HSPs)
scaffold0002 (613-683)||(453849-453919)
[»] scaffold0146 (1 HSPs)
scaffold0146 (618-655)||(16441-16478)


Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 14 - 703
Target Start/End: Original strand, 15396722 - 15397413
Alignment:
Q  14 atcatgtttaacttagaagttcttataatatgagatactaaaaagaaaatgtattttattggtatatgtagattgtagtaccaattattttctaaaaatc 113  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  15396722 atcatgtttaacttaggagttcttataatatgatatactaaaaagaaaatgtattttattggtatatatagactgtagtaccaattattttctaaaaatc 15396821  T
Q  114 atccttcaatcatgcaacc-tcatacttgcacaaccttaggatctctctcatttcaacataaattcggttaattcatatgtccctttaagagttgtcagg 212  Q
    ||||||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||||| |||||| |||| ||||||||| |||| |||||    
T  15396822 atccttcaatcatgcaaccctcatacttgcacaaccttcgaatccctctcatttcaacataaattcgattaatttatatatccctttaaaagttatcagg 15396921  T
Q  213 ggttgcacattatccacatgtcttgtgcacctgcgaatactcctcgccatcctcaaacttcatacgtcacatagaatattaatgtatagaattcaaattt 312  Q
     ||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  15396922 agttgctcattgtccacgtgtcttgtgcacctgcgaatactcctcgccatcctcaaacctcatacgtcacatagaatctcaatgtatagaattcaaattt 15397021  T
Q  313 cttttggagttgtaaaatagtattaatatcactttaaaggataaaacatttatatatcctcaattgttttctttgtttattttaaagtgaatttaaattt 412  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| ||  |||||||||||||||||||||||||    
T  15397022 cttttggagttgtaaaataatattaatatcactttaaaggataaaacatttctctatcctcaattgtttttttaatttattttaaagtgaatttaaattt 15397121  T
Q  413 tatattaatttaacaaatatgatactggtatattcaacttaactctacaatatgctactagaaaaattctctataacnnnnnnnnnatggttcttcacct 512  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||         |||||| |||||||    
T  15397122 tatattaatttaacaaatatgatactggtatattcaactaaactctacaatatgctactagaaaaattctctataactttttttttatggttgttcacct 15397221  T
Q  513 ccaacaaatcagccatggttattttt--aaggttctctctttcattccttcattaagagggtggttttggatcaattttatacccgaaatcatccttttt 610  Q
    ||||||| |||||| ||||| |||||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||    
T  15397222 ccaacaagtcagcc-tggtttttttttcaaggttctctctttcattccttcattatgagggtgattttggatcaattttatactcgaaatcatccatttt 15397320  T
Q  611 cgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctgagtgcggctatgtg 703  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||  |||| |||||||||||||||| ||||||||||||||||||    
T  15397321 cgttttgttctctatattttaatataaataagtgattttcacataaatttggattttgtctctgtgatttcgtcgtctgagtgcggctatgtg 15397413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 681
Target Start/End: Complemental strand, 38520768 - 38520626
Alignment:
Q  540 aggttctctctttca-ttccttcattaagagggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaa 638  Q
    ||||| ||||||||| || |||||||||| ||||||||||||||||||||| |||| |||||||  | | ||| | || |||||| |||||| || ||||    
T  38520768 aggttttctctttcagtttcttcattaagggggtggttttggatcaattttttacctgaaatcactcatcttcatctttttctctctatttcgatctaaa 38520669  T
Q  639 taagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||||||||||||||| ||||  |||||||||  ||||||||    
T  38520668 taagtgattttcacatagatctatgttttttcttcgtgatttc 38520626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 14545445 - 14545508
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||||||||||||| ||||||||||||||||||||| ||||  ||||||||| |||||||||    
T  14545445 ttctctatatttcaatctaaataagtgattttcacatagatctaggttttttctttgtgatttc 14545508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 568 - 688
Target Start/End: Complemental strand, 50272346 - 50272225
Alignment:
Q  568 agggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgag-ttt 666  Q
    ||||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||| ||||||||||| |||| || |||    
T  50272346 agggtggttttgggtcaattcttgacctgaaatcacccctattcatctttttctctttatttcaatctaaataagtaattttcacatagatctaagtttt 50272247  T
Q  667 tttctctgtgatttcgtcttct 688  Q
    ||||| ||||||||| ||||||    
T  50272246 tttctttgtgatttcatcttct 50272225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 7997663 - 7997763
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| | ||||||  | | ||||||| |||| ||| | || |||||| ||||||||||||||||||||||||||||||| ||||  ||||||    
T  7997663 gggtggttttgggttaatttttgatctgaaatcacccttcttcatctttttctctttatttcaatataaataagtgattttcacatagatctaggttttt 7997762  T
Q  669 t 669  Q
    |    
T  7997763 t 7997763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 626 - 681
Target Start/End: Original strand, 3871342 - 3871397
Alignment:
Q  626 atttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||    
T  3871342 atttcaatctaaataagtgattttcacatagatctaagttttttctttgtgatttc 3871397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 671
Target Start/End: Original strand, 27872615 - 27872717
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| ||||||||  ||  ||||||| || | ||| | || ||| || ||||||||| ||||||||||||||||||||| |||| |||||||    
T  27872615 gggtggttttgggtcaatttttgacatgaaatcacccatcttcatctttttcgctctatttcaatctaaataagtgattttcacatagatctaagttttt 27872714  T
Q  669 tct 671  Q
    |||    
T  27872715 tct 27872717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 33291624 - 33291510
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgtt-ctctatatttcaatataaataagtgattttcacataaatctgag-ttt 666  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||| |||| || || | ||||||||||||||||||||||||||||||||||||  | |||    
T  33291624 gggtggttttgggtcaattcttgacctgaaatcacccctcttcattttttttctttctatttcaatataaataagtgattttcacataaatctatgtttt 33291525  T
Q  667 tttctctgtgatttc 681  Q
    ||||| |||||||||    
T  33291524 tttctttgtgatttc 33291510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 669
Target Start/End: Complemental strand, 30818550 - 30818451
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||| ||||||| |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  30818550 gggtagttttgggtcaattattgacctgaaatcacccatcttcatctttttctctctatttcaatctaaataagtgattttcacataaatct-agttttt 30818452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 681
Target Start/End: Complemental strand, 5324713 - 5324650
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||| ||||||||| |||||||||||||||||| ||||| | ||||||| || |||||||||    
T  5324713 ttctctctatttcaatctaaataagtgattttcacgtaaatttaagtttttcctttgtgatttc 5324650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 34519058 - 34519121
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||||| | |||||||    
T  34519058 ttctctctatttcaatctaaataagtgattttcacatagatctaggttttttctttttgatttc 34519121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 625 - 684
Target Start/End: Original strand, 44637354 - 44637413
Alignment:
Q  625 tatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttcgtc 684  Q
    ||||||||| |||||||||||||||||| || |||| ||||| |||| ||||||||||||    
T  44637354 tatttcaatctaaataagtgattttcacgtagatctaagtttcttctttgtgatttcgtc 44637413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 569 - 660
Target Start/End: Complemental strand, 45806014 - 45805923
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||||||||| ||||||||  | | ||||||| | || ||| | || |||||| ||||||||| ||||||||||| ||||||||||||||    
T  45806014 gggtggttttgggtcaatttttgatctgaaatcacctttcttcctctttttctctctatttcaatctaaataagtgactttcacataaatct 45805923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 693
Target Start/End: Complemental strand, 18569515 - 18569390
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagtttt- 667  Q
    |||||||||||| ||||||||  ||  ||||||| |  | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  |||||     
T  18569515 gggtggttttgggtcaatttttgacaagaaatcacctgtcttcatctttttctctctatttcaatctaaataagtgattttcacatagatctaggttttc 18569416  T
Q  668 ttctctgtgatttcgtcttctgagtg 693  Q
    ||||  ||||||||||| | ||||||    
T  18569415 ttcttcgtgatttcgtcatttgagtg 18569390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 693
Target Start/End: Complemental strand, 25406440 - 25406364
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct-gagttttttctctgtgatttcgtcttctgagtg 693  Q
    |||||| ||||||||| ||||||||||| ||||||||| |||| |  |||||||| |||||||||||| ||| ||||    
T  25406440 ttctctctatttcaatctaaataagtgactttcacatagatctaggtttttttctttgtgatttcgtcatctaagtg 25406364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 669
Target Start/End: Complemental strand, 25728164 - 25728064
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| |||||||  | | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  25728164 gggtggttttgggtcaattcttgacctgaaatcactcctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggttttt 25728065  T
Q  669 t 669  Q
    |    
T  25728064 t 25728064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 28035064 - 28035128
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct-gagttttttctctgtgatttc 681  Q
    |||||| ||||||||| ||||||||||||||||||||| |||| |  |||||||| |||||||||    
T  28035064 ttctctctatttcaatctaaataagtgattttcacatagatctaggtttttttctttgtgatttc 28035128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 30878951 - 30879051
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| ||||||||  ||| || ||||||  | ||| | || |||||| ||||| ||| ||||||||||||||||||||| ||||  ||||||    
T  30878951 gggtggttttgggtcaatttttgacctgagatcatctctcttcatctttttctctttattttaatctaaataagtgattttcacatagatctatgttttt 30879050  T
Q  669 t 669  Q
    |    
T  30879051 t 30879051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 50148248 - 50148348
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| || | | |||||||||| | ||| |  | |||||| ||||| ||| ||||||||||||||||||||| ||||  ||||||    
T  50148248 gggtggttttgggtcaattctagatctgaaatcatccatcttcatccttttctctttattttaatctaaataagtgattttcacatagatctaggttttt 50148347  T
Q  669 t 669  Q
    |    
T  50148348 t 50148348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 51871740 - 51871852
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  |||  |||||| || | ||| | || |||||| ||||||||| ||||||||||| ||||||||| ||||   |||||    
T  51871740 gggtggttttgggtcaattcttgacctaaaatcacccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctagcttttt 51871839  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  51871840 tctttgtgatttc 51871852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 5701182 - 5701233
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  |||||||    
T  5701182 ttctctttatttcaatttaaataagtgattttcacatagatctaggtttttt 5701233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Complemental strand, 35584777 - 35584726
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  |||||||    
T  35584777 ttctctttatttcaatctaaataagtgattttcacatagatctaggtttttt 35584726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Complemental strand, 45426218 - 45426167
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||    
T  45426218 ttctctctatttaaatctaaataagtgattttcacatagatctaagtttttt 45426167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 20266227 - 20266269
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||    
T  20266227 ttctctttatttcaatctaaataagtgattttcacatagatct 20266269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 655
Target Start/End: Complemental strand, 19716053 - 19716016
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  19716053 ttctctttatttcaatctaaataagtgattttcacata 19716016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 51868850 - 51868737
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtttt 667  Q
    |||||||||||| | |||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||| ||||||||| |||| |  ||||    
T  51868850 gggtggttttgggttaattcttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctaggttttt 51868751  T
Q  668 ttctctgtgatttc 681  Q
    |||| |||||||||    
T  51868750 ttctttgtgatttc 51868737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 681
Target Start/End: Original strand, 4192717 - 4192827
Alignment:
Q  571 gtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttttc 670  Q
    |||||||||||||||||||  ||| || |||| || | ||| | || |||||||||||||||| ||||||||||||||||||||| || |  ||||||||    
T  4192717 gtggttttggatcaatttttgacctgagatcacccctcttcatctttttctctatatttcaatctaaataagtgattttcacatatatttaggttttttc 4192816  T
Q  671 tctgtgatttc 681  Q
    | |||||||||    
T  4192817 tttgtgatttc 4192827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 3725057 - 3725169
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| ||||||||  |||  ||||||| | | ||| | || |||||| ||||||||||||||||||||||||||||||| ||||   |||||    
T  3725057 gggtggttttgggtcaatttttgacctaaaatcattcctcttcatctttttctctctatttcaatataaataagtgattttcacatagatcttgattttt 3725156  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  3725157 tctttgtgatttc 3725169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 30420553 - 30420653
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||||||||||||  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  30420553 gggtggttttggatcaatttttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggttttt 30420652  T
Q  669 t 669  Q
    |    
T  30420653 t 30420653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 32913118 - 32913230
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    ||||||||||||||||||| |  ||| ||||||| || | ||  |  | |||||||||||||||| ||||||||||||||||||||| ||||  ||||||    
T  32913118 gggtggttttggatcaattcttgacctgaaatcacccctcttgatccttttctctatatttcaatttaaataagtgattttcacatagatctaggttttt 32913217  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  32913218 tctttgtgatttc 32913230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 635 - 703
Target Start/End: Original strand, 36323801 - 36323869
Alignment:
Q  635 taaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctgagtgcggctatgtg 703  Q
    ||||||||||||||||||||| || |  |||||||||||||||||||||| | ||||||||||| ||||    
T  36323801 taaataagtgattttcacatagatttaggttttttctctgtgatttcgtcgtttgagtgcggctttgtg 36323869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 618 - 693
Target Start/End: Original strand, 8805792 - 8805867
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctgagtg 693  Q
    |||||| ||||||||| ||||||||||||||||||||  ||||  ||||||||| ||||||||| || ||||||||    
T  8805792 ttctctttatttcaatttaaataagtgattttcacatggatctaggttttttctttgtgatttcatcatctgagtg 8805867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 660
Target Start/End: Complemental strand, 21570612 - 21570522
Alignment:
Q  570 ggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    ||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||||||||||||| ||||||||||||||||||||| ||||    
T  21570612 ggtggttttgggtcaattcttgacctgaaatcacccctcttcatctttttctctatatttcaatctaaataagtgattttcacatagatct 21570522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 596 - 681
Target Start/End: Complemental strand, 40626205 - 40626120
Alignment:
Q  596 gaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||||| || | ||||| || |||||| ||||||||| |||||||| |||||||||||| ||||  ||||||||| |||||||||    
T  40626205 gaaatcacccctcttcgtctttttctctctatttcaatctaaataagggattttcacatagatctacgttttttctttgtgatttc 40626120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 3270433 - 3270321
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| |||||||  | ||||| | || |||| | ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  3270433 gggtggttttgggtcaattcttgacctgaaatcactcattttcatctttttctttttatttcaatctaaataagtgattttcacatagatctaggttttt 3270334  T
Q  669 tctctgtgatttc 681  Q
    | | |||||||||    
T  3270333 tttttgtgatttc 3270321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 8971833 - 8971719
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttc--gttttgttctctatatttcaatataaataagtgattttcacataaatctgagttt 666  Q
    |||||||||||| |||||| |  ||| |||||||||| | |||   ||||  ||||| ||||| ||| ||||||||||||||||||||| ||||  ||||    
T  8971833 gggtggttttgggtcaattcttgacctgaaatcatccctcttcatctttttctctctttattttaatctaaataagtgattttcacatagatctaggttt 8971734  T
Q  667 tttctctgtgatttc 681  Q
    ||||| |||||||||    
T  8971733 tttctttgtgatttc 8971719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 22421661 - 22421724
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||| ||||||||| ||||||||||| ||||||||| ||||  ||||||||| |||||||||    
T  22421661 ttctctctatttcaatctaaataagtgactttcacatagatctaggttttttctttgtgatttc 22421724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 27477080 - 27477143
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||   |||||||| |||||||||    
T  27477080 ttctctatatttcaatctaaataagtaattttcacatagatctagattttttctttgtgatttc 27477143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 693
Target Start/End: Complemental strand, 32197950 - 32197875
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctgagtg 693  Q
    |||||| ||||||||||||||||| |||||||  ||||||| |  ||||||||| |||||||||||| ||| ||||    
T  32197950 ttctctttatttcaatataaataaatgatttttgcataaatttaggttttttctttgtgatttcgtcatctaagtg 32197875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 681
Target Start/End: Original strand, 45128078 - 45128193
Alignment:
Q  567 gagggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtt 665  Q
    |||||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||| ||||||||| |||| |  ||    
T  45128078 gagggtggttttgggtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgactttcacatagatctaggttt 45128177  T
Q  666 ttttctctgtgatttc 681  Q
    |||||| |||||||||    
T  45128178 ttttctttgtgatttc 45128193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 669
Target Start/End: Complemental strand, 27249357 - 27249256
Alignment:
Q  568 agggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagtttt 667  Q
    ||||||||||||| |||||  |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  |||||    
T  27249357 agggtggttttgggtcaatacttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggtttt 27249258  T
Q  668 tt 669  Q
    ||    
T  27249257 tt 27249256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 2808675 - 2808564
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||| | |  |||||| ||||||| | ||||||||||||||||||||| |||| || ||||    
T  2808675 gggtggttttgggtcaattcttgacctgaaatcacccctcttcatctatttctctctatttcagtctaaataagtgattttcacatagatct-aggtttt 2808577  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  2808576 tctttgtgatttc 2808564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 6173557 - 6173621
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct-gagttttttctctgtgatttc 681  Q
    |||||| ||||||||| ||||||||||||||||||||| |||| |  |||||||| |||||||||    
T  6173557 ttctctctatttcaatctaaataagtgattttcacatagatctaggtttttttctttgtgatttc 6173621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 681
Target Start/End: Complemental strand, 40660080 - 40660024
Alignment:
Q  625 tatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||||||| ||||||||||||||||||||| ||||   |||||||| |||||||||    
T  40660080 tatttcaatctaaataagtgattttcacatagatctagattttttctttgtgatttc 40660024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Complemental strand, 31581875 - 31581825
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| |||| ||||||||    
T  31581875 ttctctctatttcaatctaaataagtgattttcacatagatct-agtttttt 31581825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 34598913 - 34598963
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| |||| ||||||||    
T  34598913 ttctctctatttcaatctaaataagtgattttcacatagatct-agtttttt 34598963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 660
Target Start/End: Original strand, 36233881 - 36233972
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||||||||| ||||||    ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||    
T  36233881 gggtggttttgggtcaattcatgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatct 36233972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 42949640 - 42949691
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  |||||||    
T  42949640 ttctctttatttcaatctaaataagtgattttcacatagatctaggtttttt 42949691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 693
Target Start/End: Complemental strand, 459479 - 459354
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtttt 667  Q
    |||||||||||| ||||||||  ||| ||||||| || | ||| |  | |||||| ||||||| | |||||||| |||||||||||| || | |  ||||    
T  459479 gggtggttttgggtcaatttttgacctgaaatcacccctcttcatccttttctctctatttcattttaaataagcgattttcacatagatataggttttt 459380  T
Q  668 ttctctgtgatttcgtcttctgagtg 693  Q
    ||||  ||||||||||| ||||||||    
T  459379 ttcttcgtgatttcgtcatctgagtg 459354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Complemental strand, 9374694 - 9374645
Alignment:
Q  635 taaataagtgattttcacataaatctgagttttttctctgtgatttcgtc 684  Q
    |||||||| ||||||||||||||||| || |||||||  |||||||||||    
T  9374694 taaataagggattttcacataaatctaagatttttcttcgtgatttcgtc 9374645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 648
Target Start/End: Original strand, 24587564 - 24587669
Alignment:
Q  543 ttctctctttcattccttcattaagagggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataag 642  Q
    |||||||||| ||||| ||||| || || ||||||||| ||||||||  |||| |||||| |  | ||| | || || ||||||||||||| |||||||     
T  24587564 ttctctctttgattccctcattgaggggatggttttgggtcaatttttgacccaaaatcacctctcttcatctttttatctatatttcaatttaaataaa 24587663  T
Q  643 tgattt 648  Q
    ||||||    
T  24587664 tgattt 24587669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 433897 - 433784
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtttt 667  Q
    |||||||||||| ||||||||  ||| |||||||||| ||||| | || |||||| ||||||||| ||||||| ||| ||||||||| |||| || ||||    
T  433897 gggtggttttgggtcaatttttgacctgaaatcatcccttttcatctttttctctctatttcaatctaaataaatgactttcacatagatctagattttt 433798  T
Q  668 ttctctgtgatttc 681  Q
    |||| |||||||||    
T  433797 ttctttgtgatttc 433784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 20116455 - 20116567
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||| ||||||| ||||||||  ||| ||||||| |||| ||| | || |||| | ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  20116455 gggtagttttgggtcaatttttgacctgaaatcacccttcttcatctttttctatctatttcaatctaaataagtgattttcacatagatctaggttttt 20116554  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  20116555 tctttgtgatttc 20116567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 23425576 - 23425464
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||||||||||||| ||||||||||||||| ||||| ||||  ||||||    
T  23425576 gggtggttttgggtcaattcttgacctgaaatcacccctcttcatctttttctctatatttcaatctaaataagtgatttttacatagatctaggttttt 23425477  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  23425476 tctttgtgatttc 23425464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 45199236 - 45199124
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    ||||||||||||||||| | |  ||| ||||||| || | ||| | || |||||||||||| ||| ||||||||||||||||| ||| |||| |||||||    
T  45199236 gggtggttttggatcaactattgacctgaaatcacccatcttcatctttttctctatattttaatttaaataagtgattttcatatagatctaagttttt 45199137  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  45199136 tctttgtgatttc 45199124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 35667436 - 35667324
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    ||||||||||||||||||| |  ||   |||||| |||| ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  35667436 gggtggttttggatcaattcttgacttaaaatcacccttcttcatatttttctctctatttcaatctaaataagtgattttcacatagatctaggttttt 35667337  T
Q  669 tctctgtgatttc 681  Q
    ||| | |||||||    
T  35667336 tctttttgatttc 35667324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 48207823 - 48207886
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||  ||||||||| |||||||||    
T  48207823 ttctcaatatttcaatctaaataagtgattttcacatagatctatgttttttctttgtgatttc 48207886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 5546280 - 5546331
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| |||||||||||||||||||||||| | ||||||||    
T  5546280 ttctctctatttcaatctaaataagtgattttcacataaatttaagtttttt 5546331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 569 - 660
Target Start/End: Original strand, 46821886 - 46821977
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||    
T  46821886 gggtggttttgggtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatct 46821977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 669
Target Start/End: Complemental strand, 2843433 - 2843332
Alignment:
Q  568 agggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagtttt 667  Q
    ||||||||||||| |||||| |  ||| |||| || || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  |||||    
T  2843433 agggtggttttgggtcaattcttgacctgaaaacacccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggtttt 2843334  T
Q  668 tt 669  Q
    ||    
T  2843333 tt 2843332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 22928075 - 22927962
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtttt 667  Q
    |||||||||||| |||||| |  ||| ||||||| || ||||| | || |||||| ||||||||| ||||||||||| ||||||| | |||| |  ||||    
T  22928075 gggtggttttgggtcaattcttgacctgaaatcaccccttttcatctttttctctctatttcaatctaaataagtgactttcacacagatctagtttttt 22927976  T
Q  668 ttctctgtgatttc 681  Q
    |||| |||||||||    
T  22927975 ttctttgtgatttc 22927962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 26492237 - 26492350
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtttt 667  Q
    |||||||||||| |||||| |  ||| ||||| | || | ||| | || |||||| ||||||||| ||||||||||||||||||||| |||| |  ||||    
T  26492237 gggtggttttgggtcaattcttgacctgaaataacccctcttcatctttttctctctatttcaatttaaataagtgattttcacatagatctagtttttt 26492336  T
Q  668 ttctctgtgatttc 681  Q
    |||| |||||||||    
T  26492337 ttctttgtgatttc 26492350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 42311152 - 42311265
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtttt 667  Q
    |||||||||||| |||||| |  ||| |||||||||| | ||| |  | |||||| ||||||||| |||||||||||| |||||||| |||| |  ||||    
T  42311152 gggtggttttgggtcaattcttgacctgaaatcatccctcttcatcattttctctctatttcaatctaaataagtgatattcacatagatctaggttttt 42311251  T
Q  668 ttctctgtgatttc 681  Q
    |||| |||||||||    
T  42311252 ttctttgtgatttc 42311265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 693
Target Start/End: Original strand, 36143738 - 36143862
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||| |||||||||||| |||  ||  ||||| |||| | ||| | || |||||| || |||||| |||||||||| ||||||| || ||||  ||||||    
T  36143738 gggttgttttggatcaaattttaacgtgaaattatccatcttcatctttttctctctaattcaatctaaataagtgtttttcacgtagatctaggttttt 36143837  T
Q  669 tctctgtgatttcgtcttctgagtg 693  Q
    |||  ||||||||||| ||||||||    
T  36143838 tcttcgtgatttcgtcgtctgagtg 36143862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 655
Target Start/End: Complemental strand, 42067219 - 42067179
Alignment:
Q  615 ttgttctctatatttcaatataaataagtgattttcacata 655  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  42067219 ttgttatctatatttcaatctaaataagtgattttcacata 42067179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 681
Target Start/End: Complemental strand, 1448985 - 1448922
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||   |||||| | |||||||||    
T  1448985 ttctctctatttcaatctaaataagtgattttcacatagatctagattttttatttgtgatttc 1448922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 681
Target Start/End: Complemental strand, 1485412 - 1485349
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||| ||||||||| ||||||||||| ||||||||| ||||   |||||||| |||||||||    
T  1485412 ttctctctatttcaatctaaataagtgactttcacatagatctagattttttctttgtgatttc 1485349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 690
Target Start/End: Complemental strand, 43369904 - 43369849
Alignment:
Q  635 taaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctga 690  Q
    ||||||||||||||||||||| || | ||||||||||  ||||||||||| |||||    
T  43369904 taaataagtgattttcacatagatataagttttttcttcgtgatttcgtcgtctga 43369849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 660
Target Start/End: Original strand, 46338925 - 46339016
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||| ||||||| |||||| |  ||| ||||| |||| | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||    
T  46338925 gggtagttttgggtcaattcttgacctgaaattatccctcttcatctttttctctttatttcaatgtaaataagtgattttcacatagatct 46339016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 3860873 - 3860915
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||| | ||||||||||||||||||||||||||||| ||||    
T  3860873 ttctctttgtttcaatataaataagtgattttcacatagatct 3860915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 21266313 - 21266355
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||    
T  21266313 ttctctttatttcaatctaaataagtgattttcacatagatct 21266355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 693
Target Start/End: Complemental strand, 32522081 - 32522007
Alignment:
Q  619 tctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctgagtg 693  Q
    ||||| ||||||||| ||||||||||||||||||||| || |  |||||||||  || |||||| | ||||||||    
T  32522081 tctctctatttcaatttaaataagtgattttcacatagatttatgttttttcttcgttatttcgccatctgagtg 32522007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 32684606 - 32684648
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||    
T  32684606 ttctctctatttcaatctaaataagtgattttcacatagatct 32684648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 693
Target Start/End: Original strand, 6001893 - 6002018
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtga-ttttcacataaatctgagtttt 667  Q
    ||||| |||||||||||||||  ||| ||||||| || | ||| | || |||||  ||||| ||| ||||||||||| |||||||||| || |  |||||    
T  6001893 gggtgattttggatcaatttttgacctgaaatcacccatcttcatctttttctccctattttaatctaaataagtgatttttcacatagatttaggtttt 6001992  T
Q  668 ttctctgtgatttcgtcttctgagtg 693  Q
     |||  ||||||||||| ||||||||    
T  6001993 ctctacgtgatttcgtcatctgagtg 6002018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 681
Target Start/End: Complemental strand, 17223136 - 17223091
Alignment:
Q  636 aaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||||||||||||||||| ||||  ||||||||| |||||||||    
T  17223136 aaataagtgattttcacatagatctaggttttttctttgtgatttc 17223091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 33109706 - 33109818
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| ||||||||  |||  ||||| ||| | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  33109706 gggtggttttgggtcaatttttgacctaaaatcgtccatcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggttttt 33109805  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  33109806 tctttgtgatttc 33109818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 17237489 - 17237377
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||  ||||||| || | ||| | || |||||||||||||||| ||||||||| ||||||||||| ||||  ||||||    
T  17237489 gggtggttttgggtcaattcttgacatgaaatcacccctcttcatctttttctctatatttcaatctaaataagttattttcacatagatctaggttttt 17237390  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  17237389 tctttgtgatttc 17237377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 681
Target Start/End: Original strand, 4468477 - 4468543
Alignment:
Q  615 ttgttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||||||| ||||||||| ||||||||||||||||| ||| ||||  ||||||||| |||||||||    
T  4468477 ttgttctctctatttcaatctaaataagtgattttcatatagatctaggttttttctttgtgatttc 4468543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 23947522 - 23947410
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||| |  | |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  23947522 gggtggttttgggtcaattcttgacctgaaatcacccatcttcatcgttttctctctatttcaatctaaataagtgattttcacatagatctaggttttt 23947423  T
Q  669 tctctgtgatttc 681  Q
    ||| | |||||||    
T  23947422 tctttttgatttc 23947410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 569 - 660
Target Start/End: Complemental strand, 7876250 - 7876159
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    ||||||||||||||||||| |  |||  |||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||    
T  7876250 gggtggttttggatcaattattgacctaaaatcacccatcttcatctttttctctttatttcaatctaaataagtgattttcacatagatct 7876159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 569 - 660
Target Start/End: Complemental strand, 7881308 - 7881217
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    ||||||||||||||||||| |  ||  ||||||| | || ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||    
T  7881308 gggtggttttggatcaattattgacttgaaatcacctttcttcatctttttctctttatttcaatctaaataagtgattttcacatagatct 7881217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 681
Target Start/End: Complemental strand, 8196614 - 8196499
Alignment:
Q  567 gagggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtt 665  Q
    |||||||||||||||||| || |  |||  |||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| |||| |  ||    
T  8196614 gagggtggttttggatcagttcttgacctaaaatcacccgtattcatctttttctctctatttcaatctaaataagtgattttcacatagatctaggttt 8196515  T
Q  666 ttttctctgtgatttc 681  Q
    |||||| |||||||||    
T  8196514 ttttctttgtgatttc 8196499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 569 - 660
Target Start/End: Original strand, 12652812 - 12652903
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||    
T  12652812 gggtggttttgggtcaattcttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtgattttcacatagatct 12652903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 13436708 - 13436750
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  13436708 ttctctctatttcaatttaaataagtgattttcacataaatct 13436750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 8496837 - 8496937
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||  |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  8496837 gggtggttttgagtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggttttt 8496936  T
Q  669 t 669  Q
    |    
T  8496937 t 8496937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 669
Target Start/End: Original strand, 17334703 - 17334747
Alignment:
Q  625 tatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||    
T  17334703 tatttcaatctaaataagtgattttcacatagatctaagtttttt 17334747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 25064107 - 25064207
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| ||||||| |  | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  25064107 gggtggttttgggtcaattcttgacctgaaatcacctctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggttttt 25064206  T
Q  669 t 669  Q
    |    
T  25064207 t 25064207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Complemental strand, 8028274 - 8028223
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| | ||||||| ||||||||||||||||||||| |||| ||||||||    
T  8028274 ttctctctgtttcaatctaaataagtgattttcacatagatctaagtttttt 8028223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 655
Target Start/End: Complemental strand, 4984734 - 4984697
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  4984734 ttctctctatttcaatctaaataagtgattttcacata 4984697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 655
Target Start/End: Complemental strand, 33740734 - 33740697
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  33740734 ttctctctatttcaatctaaataagtgattttcacata 33740697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 621 - 681
Target Start/End: Original strand, 27751853 - 27751913
Alignment:
Q  621 tctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||    
T  27751853 tctatatttcaatataaataagtgattttcacatagatctaggttttttctttgtgatttc 27751913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 567 - 681
Target Start/End: Original strand, 781262 - 781376
Alignment:
Q  567 gagggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttt 666  Q
    |||||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||||||||||||| ||||||||||||||||| ||| ||||  | ||    
T  781262 gagggtggttttggttcaattcttgacctgaaatcacccatcttcatctttttctctatatttcaatctaaataagtgattttcagatagatctagggtt 781361  T
Q  667 tttctctgtgatttc 681  Q
    ||||| |||||||||    
T  781362 tttctttgtgatttc 781376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 7887142 - 7887030
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| || ||| |  ||| |||||||||| | ||||| || | |||| ||||| ||| ||||||||||||||||||||||||||  ||||||    
T  7887142 gggtggttttgggtccattcttgacctgaaatcatccctcttcgtcttttcctctctattttaatctaaataagtgattttcacataaatctatgttttt 7887043  T
Q  669 tctctgtgatttc 681  Q
    ||| | |||||||    
T  7887042 tctttttgatttc 7887030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 696
Target Start/End: Original strand, 16981165 - 16981292
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    ||||||| ||||||||||| |  ||| |||||||  | | ||| | || |||||| ||||||||| |||||||||||||| |||||| ||||  ||||||    
T  16981165 gggtggtattggatcaattcttgacctgaaatcactcctcttcatatttttctctctatttcaatctaaataagtgatttacacatatatctaggttttt 16981264  T
Q  669 tctctgtgatttcgtcttctgagtgcgg 696  Q
    ||| ||||||||| || ||| |||||||    
T  16981265 tctttgtgatttcatcatctaagtgcgg 16981292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 30298132 - 30298195
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||||||||||||| ||||||||||||||||||||| ||||  ||||||||| | |||||||    
T  30298132 ttctctatatttcaatctaaataagtgattttcacatagatctaggttttttctttatgatttc 30298195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 681
Target Start/End: Complemental strand, 35475495 - 35475429
Alignment:
Q  615 ttgttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||| ||||||||||||| ||||||||||||||||||||| ||||   |||||||| |||||||||    
T  35475495 ttgttatctatatttcaatctaaataagtgattttcacatagatctagattttttctttgtgatttc 35475429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 680
Target Start/End: Complemental strand, 36344645 - 36344583
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgattt 680  Q
    |||||||||||||||| ||||||||| ||||||||||  |||| |||||||||| ||||||||    
T  36344645 ttctctatatttcaatctaaataagttattttcacatggatctaagttttttctttgtgattt 36344583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 669
Target Start/End: Complemental strand, 7150537 - 7150440
Alignment:
Q  572 tggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    ||||||||||| ||||||  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||| ||||||||| |||| ||||||||    
T  7150537 tggttttggattaatttttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctaagtttttt 7150440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 669
Target Start/End: Complemental strand, 27267066 - 27266965
Alignment:
Q  568 agggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagtttt 667  Q
    ||||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  |||||    
T  27267066 agggtggttttgggtcaattcttgacctgaaatcacccctcttcatatttttctctctatttcaatctaaataagtgattttcacatagatctaggtttt 27266967  T
Q  668 tt 669  Q
    ||    
T  27266966 tt 27266965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 19281149 - 19281037
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| | ||||||  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||| ||||||| | ||||  ||||||    
T  19281149 gggtggttttgggtaaatttttgaccggaaatcacccatcttcatctttttctctctatttcaatctaaataagtgactttcacacatatctaggttttt 19281050  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  19281049 tctttgtgatttc 19281037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 30371599 - 30371699
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| ||||| ||  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  30371599 gggtggttttgggtcaatatttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggttttt 30371698  T
Q  669 t 669  Q
    |    
T  30371699 t 30371699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 693
Target Start/End: Complemental strand, 27576505 - 27576430
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctgagtg 693  Q
    |||||| ||||||||| |||||||||||| |||||||| ||||   |||||||| |||||||||||| | ||||||    
T  27576505 ttctctctatttcaatgtaaataagtgatattcacatagatctagattttttctttgtgatttcgtcatatgagtg 27576430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 655
Target Start/End: Complemental strand, 21060437 - 21060400
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||||||||||||| |||||||||||||||||||||    
T  21060437 ttctctatatttcaatctaaataagtgattttcacata 21060400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 671
Target Start/End: Complemental strand, 35631842 - 35631793
Alignment:
Q  622 ctatatttcaatataaataagtgattttcacataaatctgagttttttct 671  Q
    |||||||||||| ||||||||||||||| ||||| |||| ||||||||||    
T  35631842 ctatatttcaatctaaataagtgatttttacatatatctaagttttttct 35631793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 10649328 - 10649428
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    ||||| |||||| |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  10649328 gggtgattttgggtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggttttt 10649427  T
Q  669 t 669  Q
    |    
T  10649428 t 10649428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 669
Target Start/End: Complemental strand, 18677671 - 18677571
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  | | |||||||||| | ||| | || |||||| ||||| ||| ||||||||||||||||||||| ||||  ||||||    
T  18677671 gggtggttttgggtcaattattgatctgaaatcatccctcttcatctttttctctctattttaatctaaataagtgattttcacatagatctaggttttt 18677572  T
Q  669 t 669  Q
    |    
T  18677571 t 18677571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 669
Target Start/End: Complemental strand, 20257899 - 20257799
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||| ||||| | ||||||||  ||| |||||||||| | | | | || |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  20257899 gggtagtttttggtcaatttttgacctgaaatcatccatctacttctttttctctctatttcaatctaaataagtgattttcacatagatctaggttttt 20257800  T
Q  669 t 669  Q
    |    
T  20257799 t 20257799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 626 - 658
Target Start/End: Original strand, 28097084 - 28097116
Alignment:
Q  626 atttcaatataaataagtgattttcacataaat 658  Q
    |||||||||||||||||||||||||||||||||    
T  28097084 atttcaatataaataagtgattttcacataaat 28097116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Complemental strand, 2057994 - 2057943
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  |||||||    
T  2057994 ttctctttatttcaatctaaataagtgattttcacatagatctaggtttttt 2057943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 681
Target Start/End: Complemental strand, 19259969 - 19259903
Alignment:
Q  618 ttctctatatttcaatataaataagtga-ttttcacataaatctgag--ttttttctctgtgatttc 681  Q
    |||||| ||||||||| ||||||||||| |||||||||| |||| ||  ||||||||||||||||||    
T  19259969 ttctctctatttcaatctaaataagtgatttttcacatagatctaagttttttttctctgtgatttc 19259903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 26578173 - 26578224
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  |||||||    
T  26578173 ttctctttatttcaatctaaataagtgattttcacatagatctaggtttttt 26578224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 34881633 - 34881683
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| |||| ||||||||    
T  34881633 ttctctctatttcaatctaaataagtgattttcacatagatct-agtttttt 34881683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 7241657 - 7241770
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtttt 667  Q
    |||||||||||| |||||| |  ||| |||| || || | ||| | || |||||| ||||||||| ||||||||||| ||||||||| |||| |  ||||    
T  7241657 gggtggttttgggtcaattcttaacctgaaaccacccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctaggttttt 7241756  T
Q  668 ttctctgtgatttc 681  Q
    |||| |||||||||    
T  7241757 ttctttgtgatttc 7241770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 7246833 - 7246946
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtttt 667  Q
    |||||||||||| |||||| |  ||| |||| || || | ||| | || |||||| ||||||||| ||||||||||| ||||||||| |||| |  ||||    
T  7246833 gggtggttttgggtcaattcttaacctgaaaccacccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctaggttttt 7246932  T
Q  668 ttctctgtgatttc 681  Q
    |||| |||||||||    
T  7246933 ttctttgtgatttc 7246946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 31381876 - 31381764
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| ||||||| || || || | || |||||| | ||||||| ||||||||||||||||||||| |||| |||||||    
T  31381876 gggtggttttgggtcaattcttgacctgaaatcaccccttctcatctttttctctctttttcaatttaaataagtgattttcacatagatctaagttttt 31381777  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  31381776 tctttgtgatttc 31381764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 618 - 681
Target Start/End: Complemental strand, 37188748 - 37188686
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||    
T  37188748 ttctctatatttcaatctaaataagtgattttcacatatatct-agttttttctttgtgatttc 37188686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 681
Target Start/End: Complemental strand, 34024641 - 34024529
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    ||||||||||||||||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||| ||||||||||| ||||  ||||||    
T  34024641 gggtggttttggatcaattcttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagttattttcacatagatctaggttttt 34024542  T
Q  669 tctctgtgatttc 681  Q
    ||| | |||||||    
T  34024541 tctttttgatttc 34024529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 618 - 681
Target Start/End: Complemental strand, 8009515 - 8009453
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||| ||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||    
T  8009515 ttctctctatttcaatctaaataagtgattttcacatagatct-agttttttctttgtgatttc 8009453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 681
Target Start/End: Complemental strand, 10359775 - 10359639
Alignment:
Q  546 tctctttca-ttccttcattaagagggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtg 644  Q
    ||||||||| || ||||||| || |||||||||||| ||||||||  ||| ||||||| ||   ||| | || |||||| |||||| || ||||||||||    
T  10359775 tctctttcagtttcttcattgagggggtggttttgggtcaatttttgacctgaaatcacccaacttcatctttttctctctatttcgatctaaataagtg 10359676  T
Q  645 attttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||| ||||| ||||  |||||||||  ||||||||    
T  10359675 attttaacatatatctaggttttttcttcgtgatttc 10359639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 669
Target Start/End: Original strand, 20569136 - 20569236
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||| |||| |||||| ||||||||| ||||||| ||||||||||||| ||||  ||||||    
T  20569136 gggtggttttgggtcaattcttaacctgaaatcacccctcttcatttttttctctttatttcaatctaaataaatgattttcacatagatctaggttttt 20569235  T
Q  669 t 669  Q
    |    
T  20569236 t 20569236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 21090086 - 21090149
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||| ||||||||||||||||||||||||||||||| || |  |||||||||  ||||||||    
T  21090086 ttctctctatttcaatataaataagtgattttcacatagatttaggttttttcttcgtgatttc 21090149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 693
Target Start/End: Complemental strand, 32952902 - 32952828
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctgagtg 693  Q
    |||||| ||||||||  |||||||||| |||||||||| |||| |||||||||| |||||||||||| ||| ||||    
T  32952902 ttctctctatttcaaattaaataagtgtttttcacatagatct-agttttttctttgtgatttcgtcatctaagtg 32952828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 554 - 669
Target Start/End: Original strand, 43444263 - 43444377
Alignment:
Q  554 attccttcattaagagggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcaca 653  Q
    ||||||||||| || |||| ||||||| ||||||||  | | ||||||| || | ||| | || |||||| ||||||||| |||||||||||||||||||    
T  43444263 attccttcattgag-gggtagttttgggtcaatttttgatctgaaatcacccatcttcatctttttctctttatttcaatctaaataagtgattttcaca 43444361  T
Q  654 taaatctgagtttttt 669  Q
    || ||||  |||||||    
T  43444362 tatatctaggtttttt 43444377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 47416817 - 47416868
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| |||| ||||||||    
T  47416817 ttctctttatttcaatctaaataagtgattttcacatagatctaagtttttt 47416868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 50766713 - 50766614
Alignment:
Q  570 ggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    ||||||||||| |||||| |  | | |||||||||| | ||| | || |||||| ||||||||| ||||||| ||||||||||||| |||| ||||||||    
T  50766713 ggtggttttgggtcaattcttgatctgaaatcatccctcttcatctttttctctttatttcaatctaaataaatgattttcacatagatctaagtttttt 50766614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 51317919 - 51317982
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||||| | |||||||    
T  51317919 ttctctctatttcaatctaaataagtgattttcacatagatctaggttttttctttttgatttc 51317982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 693
Target Start/End: Complemental strand, 35965180 - 35965055
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtga-ttttcacataaatctgagtttt 667  Q
    |||||||||||| |||||||| |||| ||||||| |  | ||| | || |||||| ||||||||| | ||||||||| |||||||||| ||||  |||||    
T  35965180 gggtggttttgggtcaattttttacctgaaatcacctctcttcatctttttctctctatttcaatctgaataagtgatttttcacatagatctaggtttt 35965081  T
Q  668 ttctctgtgatttcgtcttctgagtg 693  Q
    || |  ||||||||||| || |||||    
T  35965080 tttttcgtgatttcgtcatccgagtg 35965055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 25273813 - 25273864
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  |||||||    
T  25273813 ttctctctatttcaatctaaataagtgattttcacatagatctaggtttttt 25273864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 29965567 - 29965618
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  |||||||    
T  29965567 ttctctttatttcaatctaaataagtgattttcacatagatctaggtttttt 29965618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Complemental strand, 43154177 - 43154126
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  |||||||    
T  43154177 ttctctctatttcaatctaaataagtgattttcacatagatctaggtttttt 43154126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Complemental strand, 53616807 - 53616756
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  |||||||    
T  53616807 ttctctttatttcaatctaaataagtgattttcacatagatctaggtttttt 53616756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 655
Target Start/End: Complemental strand, 2115793 - 2115707
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||||||||| |||||| |  ||| |||||||   || ||| | || |||||| ||||||||| |||||||||||||||||||||    
T  2115793 gggtggttttgggtcaattattgacctgaaatcacttttcttcatctttttctctttatttcaatctaaataagtgattttcacata 2115707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 655
Target Start/End: Complemental strand, 9529083 - 9528997
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||  | || |||||| ||||||||| |||||||||||||||||||||    
T  9529083 gggtggttttgggtcaattcttgacctgaaatcacccctctttatctttttctctttatttcaatctaaataagtgattttcacata 9528997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 655
Target Start/End: Complemental strand, 38706887 - 38706829
Alignment:
Q  597 aaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||| |||| ||| | || |||||| ||||||||| |||||||||||||||||||||    
T  38706887 aaatcacccttcttcatctttttctctctatttcaatctaaataagtgattttcacata 38706829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 660
Target Start/End: Original strand, 1531841 - 1531882
Alignment:
Q  619 tctctatatttcaatataaataagtgattttcacataaatct 660  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||    
T  1531841 tctctctatttcaatctaaataagtgattttcacatagatct 1531882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 670
Target Start/End: Complemental strand, 10389958 - 10389857
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| |||||||  | | ||| | || |||||| ||||||||| ||||||||||| ||||||||| ||||  ||||||    
T  10389958 gggtggttttgggtcaattcttgacctgaaatcactcatcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctaggttttt 10389859  T
Q  669 tc 670  Q
    ||    
T  10389858 tc 10389857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 693
Target Start/End: Complemental strand, 21554946 - 21554889
Alignment:
Q  636 aaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctgagtg 693  Q
    |||||||||||||||||||||||||   | |||||| |||||||||||  ||||||||    
T  21554946 aaataagtgattttcacataaatctagatattttctttgtgatttcgttgtctgagtg 21554889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 618 - 680
Target Start/End: Complemental strand, 44100088 - 44100026
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgattt 680  Q
    |||||||||||||||| ||||||||| ||||||||||| |||| |||||||||| ||||||||    
T  44100088 ttctctatatttcaatctaaataagttattttcacatagatctaagttttttctttgtgattt 44100026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 11725561 - 11725673
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||||| || |||||| ||||||||| |||||||||| |||||||||| ||||  ||||||    
T  11725561 gggtggttttgggtcaattcttgacctgaaatcacccctcttcgtctttttctctttatttcaatctaaataagtgtttttcacatagatctaggttttt 11725660  T
Q  669 tctctgtgatttc 681  Q
    ||| | |||||||    
T  11725661 tctttttgatttc 11725673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 681
Target Start/End: Original strand, 35580326 - 35580449
Alignment:
Q  558 cttcattaagagggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaa 657  Q
    ||||||| ||||||||||||||| ||||||||  ||   ||||||  | | ||| | || |||||| ||||||||| ||||||||||||||||||||| |    
T  35580326 cttcattgagagggtggttttgggtcaatttttgacataaaatcactcatcttcatctttttctctctatttcaatttaaataagtgattttcacataga 35580425  T
Q  658 tctgagttttttctctgtgatttc 681  Q
    |||  |||||||||  ||||||||    
T  35580426 tctaggttttttcttcgtgatttc 35580449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 11196771 - 11196881
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| |||||||||| | ||| | || ||||||||  |||||| ||||||||||||||||||||| ||||  ||||||    
T  11196771 gggtggttttgggtcaattcttgacctgaaatcatccatcttcatctttttctctat--ttcaatctaaataagtgattttcacatagatctaggttttt 11196868  T
Q  669 tctctgtgatttc 681  Q
    ||| | |||||||    
T  11196869 tctttttgatttc 11196881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 569 - 660
Target Start/End: Original strand, 9072596 - 9072687
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||||||||| ||||||||  ||  ||||||| || | ||| | || |||||| ||||||||| ||||||||||| ||||||||||||||    
T  9072596 gggtggttttgggtcaatttttgacttgaaatcacccctcttcatctttttctctctatttcaatttaaataagtgactttcacataaatct 9072687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 19876140 - 19876203
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||| |||||||||| ||||||||||||||||||||| |||   ||||||||| |||||||||    
T  19876140 ttctcaatatttcaatctaaataagtgattttcacatagatcaaggttttttctttgtgatttc 19876203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 655
Target Start/End: Complemental strand, 9619563 - 9619477
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| |||||||||||||||||||||    
T  9619563 gggtggttttgggtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgattttcacata 9619477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 660
Target Start/End: Complemental strand, 14907123 - 14907038
Alignment:
Q  575 ttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    ||||||||||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||    
T  14907123 ttttggatcaattcttgacctgaaatcacccatcttcatctttttctctttatttcaatctaaataagtgattttcacatagatct 14907038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 693
Target Start/End: Complemental strand, 15597314 - 15597247
Alignment:
Q  626 atttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctgagtg 693  Q
    |||||||| ||||||||||||||||||||| ||||  |||||||||   |||||||||| || |||||    
T  15597314 atttcaatctaaataagtgattttcacatagatctaggttttttcttcatgatttcgtcatccgagtg 15597247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 681
Target Start/End: Complemental strand, 27747260 - 27747205
Alignment:
Q  626 atttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||||| ||||||||| |||||||||||||| | ||||||||||  ||||||||    
T  27747260 atttcaatttaaataagtaattttcacataaatataagttttttcttcgtgatttc 27747205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 660
Target Start/End: Complemental strand, 43890330 - 43890239
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||||||||||||| ||||  ||| ||||||| || | ||| | || |||||| || |||||| ||||||||||||||| ||||| ||||    
T  43890330 gggtggttttggatcattttttgacctgaaatcacccctcttcatctttttctctttaattcaatctaaataagtgattttgacatagatct 43890239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 660
Target Start/End: Original strand, 2655797 - 2655839
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||    
T  2655797 ttctctttatttcaatctaaataagtgattttcacatagatct 2655839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 655
Target Start/End: Complemental strand, 9498806 - 9498721
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||||||||| |||||| | |||| ||||||| || | ||| | || || ||| ||||||||| |||||||||||||||||||||    
T  9498806 gggtggttttgggtcaattct-tacctgaaatcacccctcttcatctttttatctttatttcaatctaaataagtgattttcacata 9498721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 627 - 697
Target Start/End: Complemental strand, 31013753 - 31013684
Alignment:
Q  627 tttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttcgtcttctgagtgcggc 697  Q
    ||||||| |||||||||| |||||||||  |||| |||||||| | |||||||||||| ||| ||||||||    
T  31013753 tttcaatctaaataagtggttttcacatctatct-agttttttttttgtgatttcgtcgtctaagtgcggc 31013684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 660
Target Start/End: Complemental strand, 32724645 - 32724603
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct 660  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||    
T  32724645 ttctctctatttcaatctaaataagtgattttcacatagatct 32724603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 681
Target Start/End: Original strand, 34611739 - 34611796
Alignment:
Q  625 tatttcaatataaataagtgattttcacataaatct-gagttttttctctgtgatttc 681  Q
    ||||||| | |||||||||||||||||||||||||| |  |||||||| |||||||||    
T  34611739 tatttcagtctaaataagtgattttcacataaatctaggtttttttctttgtgatttc 34611796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 693
Target Start/End: Original strand, 14464376 - 14464504
Alignment:
Q  568 agggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgag---t 664  Q
    ||||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| |||| ||   |    
T  14464376 agggtggttttgggtcaattcttgacctgaaatcacccctattcatctttttctctttatttcaatctaaataagtgattttcacatagatctaagtttt 14464475  T
Q  665 tttttctctgtgatttcgtcttctgagtg 693  Q
    ||||||| ||||||||| |||||| ||||    
T  14464476 tttttctttgtgatttcatcttctaagtg 14464504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 29503332 - 29503444
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    ||||| |||||| |||||| |  ||| ||||||| || | ||| | || |||||||||||||||| ||||||| ||||||||||||| ||||  ||||||    
T  29503332 gggtgattttgggtcaattcttgacctgaaatcacccatcttcatatttttctctatatttcaatctaaataattgattttcacatagatctaggttttt 29503431  T
Q  669 tctctgtgatttc 681  Q
    ||| |||||||||    
T  29503432 tctttgtgatttc 29503444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 570 - 649
Target Start/End: Complemental strand, 36735356 - 36735277
Alignment:
Q  570 ggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgatttt 649  Q
    ||||||||| | |||||||| |||| |||||||||| | ||| ||||  ||||||||||||||| |||||||||||||||    
T  36735356 ggtggtttttggtcaattttttacctgaaatcatccctcttcatttttctctctatatttcaatttaaataagtgatttt 36735277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 572 - 655
Target Start/End: Original strand, 36905994 - 36906077
Alignment:
Q  572 tggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacata 655  Q
    ||||||||| |||||| |  ||| ||||||| |||| ||| | || |||||| |||||||||||||||||||||||||||||||    
T  36905994 tggttttgggtcaattcttgacctgaaatcacccttcttcatctttttctctttatttcaatataaataagtgattttcacata 36906077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 681
Target Start/End: Complemental strand, 39917599 - 39917489
Alignment:
Q  571 gtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttttc 670  Q
    |||||||||| |||||| |  ||| |||||||||| | ||| | || |||||| || |||||| ||||||||||||||||||||| ||||  ||||||||    
T  39917599 gtggttttgggtcaattcttgacctgaaatcatccatcttcatatttttctctctaattcaatctaaataagtgattttcacatagatctaggttttttc 39917500  T
Q  671 tctgtgatttc 681  Q
      |||||||||    
T  39917499 cttgtgatttc 39917489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 669
Target Start/End: Complemental strand, 3850660 - 3850560
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    ||||||||||||||||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| ||||||||||| ||||||||| ||||  ||||||    
T  3850660 gggtggttttggatcaattcttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctaggttttt 3850561  T
Q  669 t 669  Q
    |    
T  3850560 t 3850560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 669
Target Start/End: Complemental strand, 25631732 - 25631632
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| ||||||||  |||  ||||||||| | | | | || |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||    
T  25631732 gggtggttttgggtcaatttttgacctaaaatcatccctctccatctttttctctctatttcaatctaaataagtgattttcacatagatctaggttttt 25631633  T
Q  669 t 669  Q
    |    
T  25631632 t 25631632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 693
Target Start/End: Original strand, 46178447 - 46178571
Alignment:
Q  570 ggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtg-attttcacataaatctgagttttt 668  Q
    ||||||||||| |||||||   ||| |||||||||| | ||| | || |||||| || |||||| ||||||||||  |||||||||| ||||  ||||||    
T  46178447 ggtggttttgggtcaatttatgacctgaaatcatccctcttcatctttttctctctaattcaatctaaataagtgctttttcacatagatctaggttttt 46178546  T
Q  669 tctctgtgatttcgtcttctgagtg 693  Q
    |||  |||||||||||||| |||||    
T  46178547 tcttcgtgatttcgtcttccgagtg 46178571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 681
Target Start/End: Complemental strand, 38440733 - 38440670
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  ||||||||| | |||||||    
T  38440733 ttctctctatttcaatctaaataagtgattttcacatagatctaggttttttctttttgatttc 38440670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 2342362 - 2342474
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtttt 667  Q
    |||||||||||| |||||| || ||| ||| ||| || | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  | ||||    
T  2342362 gggtggttttgggtcaattctaaacctgaa-tcaaccctcttcatctttttctctctatttcaatctaaataagtgattttcacatatatctatattttt 2342460  T
Q  668 ttctctgtgatttc 681  Q
    |||| |||||||||    
T  2342461 ttctttgtgatttc 2342474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 681
Target Start/End: Original strand, 4172464 - 4172549
Alignment:
Q  597 aaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagttttttctctgtgatttc 681  Q
    ||||||||| | ||| | || |||||| ||||||||| ||||||||||||||||||||| |||| |  |||||||| |||||||||    
T  4172464 aaatcatccatcttcatctttttctctctatttcaatctaaataagtgattttcacatagatctaggtttttttctttgtgatttc 4172549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 4178434 - 4178547
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatct-gagtttt 667  Q
    |||||||||||| |||||| |  |||  |||||| || | ||| | || |||||| ||||||||| ||||||||||||||||| |||||||| |  ||||    
T  4178434 gggtggttttgggtcaattcttgacctaaaatcacccatcttcatctttttctctctatttcaatctaaataagtgattttcagataaatctagcttttt 4178533  T
Q  668 ttctctgtgatttc 681  Q
    |||| |||||||||    
T  4178534 ttctttgtgatttc 4178547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 669
Target Start/End: Complemental strand, 35499407 - 35499306
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatccttt-ttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagtttt 667  Q
    |||||||||| | |||||||| |||| ||||||| ||  | ||| | || |||||| ||||||||| ||||||||||||||||||||| ||||  |||||    
T  35499407 gggtggtttttggtcaattttttacctgaaatcaccccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggtttt 35499308  T
Q  668 tt 669  Q
    ||    
T  35499307 tt 35499306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 669
Target Start/End: Complemental strand, 44907604 - 44907504
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttt 668  Q
    |||||||||||| |||||| |  ||| ||||||| || | ||| | || |||||| ||||||||| |||| |||||||||||||||| ||||  ||||||    
T  44907604 gggtggttttgggtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaacaagtgattttcacatagatctaggttttt 44907505  T
Q  669 t 669  Q
    |    
T  44907504 t 44907504  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 681
Target Start/End: Complemental strand, 49552372 - 49552316
Alignment:
Q  625 tatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||||||| ||||||||||| |||||||| |||||  ||||||||| |||||||||    
T  49552372 tatttcaatctaaataagtgaatttcacattaatctaggttttttctttgtgatttc 49552316  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 681
Target Start/End: Complemental strand, 50611573 - 50611509
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatct-gagttttttctctgtgatttc 681  Q
    |||||||||||||||| ||||||||||||||||| ||| |||| |  |||||||| |||||||||    
T  50611573 ttctctatatttcaatctaaataagtgattttcatatagatctaggtttttttctttgtgatttc 50611509  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 32607386 - 32607437
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagtttttt 669  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||  |||||||    
T  32607386 ttctctttatttcaatctaaataagtgattttcacatagatctaggtttttt 32607437  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 655
Target Start/End: Original strand, 46934512 - 46934598
Alignment:
Q  569 gggtggttttggatcaattttatacccgaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||||||| | ||||||||  ||| ||||||| || | ||| | ||  ||||| ||||||||| |||||||||||||||||||||    
T  46934512 gggtggtttttggtcaatttttgacctgaaatcacccctcttcatctttctctctctatttcaatctaaataagtgattttcacata 46934598  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 655
Target Start/End: Original strand, 17237721 - 17237758
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  17237721 ttctctctatttcaatctaaataagtgattttcacata 17237758  T

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Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 618 - 681
Target Start/End: Complemental strand, 201527 - 201464
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    |||||||||||||||| ||||||||||||||||||||| ||||   |||||||| |||||||||    
T  201527 ttctctatatttcaatctaaataagtgattttcacatagatctagattttttctttgtgatttc 201464  T

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Target: scaffold0311 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 596 - 681
Target Start/End: Original strand, 8619 - 8704
Alignment:
Q  596 gaaatcatcctttttcgttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttc 681  Q
    ||||||| || ||||| | || || ||| ||||||||| ||||||||||||||||||||| ||||  ||||||||| |||||||||    
T  8619 gaaatcaccccttttcatctttttatctctatttcaatctaaataagtgattttcacatagatctaggttttttctttgtgatttc 8704  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 613 - 683
Target Start/End: Original strand, 453849 - 453919
Alignment:
Q  613 ttttgttctctatatttcaatataaataagtgattttcacataaatctgagttttttctctgtgatttcgt 683  Q
    |||| |||||| ||||| ||| ||||||||||||||||||||| || |  |||||||||  ||||||||||    
T  453849 tttttttctctttattttaatttaaataagtgattttcacatatatttacgttttttcttcgtgatttcgt 453919  T

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Target: scaffold0146 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 655
Target Start/End: Complemental strand, 16478 - 16441
Alignment:
Q  618 ttctctatatttcaatataaataagtgattttcacata 655  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  16478 ttctctctatttcaatctaaataagtgattttcacata 16441  T

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