View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_22 (Length: 549)
Name: NF8991_low_22
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 313 - 530
Target Start/End: Original strand, 29600713 - 29600930
Alignment:
| Q |
313 |
ataattgagaaattacattggtctctcacttcttcttgaggttaatttcactgtttatctcgaagattttgatttacatagtgtgtagtacattctatgt |
412 |
Q |
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| T |
29600713 |
ataattgagaaattacattggtctcgcacttcttcttgaggttaatttcactgtttatctcgaagattttgatttacatagtgtgtagtacattctatgt |
29600812 |
T |
|
| Q |
413 |
gctgttcattaagctttcccttttacttgttgattgttgtctttgatcttgagtgaattgttcaatgtccttttctttctctcaattttggaatagatag |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29600813 |
gctgttcattaagctttcccttttacttgttgattgttgtctttgatcttgagtgaattgttcaatgtccttttctttttctcaattttggaatagatag |
29600912 |
T |
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| Q |
513 |
ggtttgatattagaacat |
530 |
Q |
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|||||||||||||||||| |
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| T |
29600913 |
ggtttgatattagaacat |
29600930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 29600405 - 29600655
Alignment:
| Q |
6 |
gagaagcagagaagagaaaatggagagaaagtttatgatagtgtgctgtattgttggcttcttgggactcttgtctgctgctactagctttgctgcagaa |
105 |
Q |
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| T |
29600405 |
gagaaacagagaagagaaaatggagagaaaggttatgatagtgtgctgtattgttggcttcttgggactcttgtctgctgctactagctttgctgcagaa |
29600504 |
T |
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| Q |
106 |
gcaacaaggattaaggtttctgtcnnnnnnnnnnnnnnnnnnnccttaccttggtttcctcgaaaacccatcaagtaaagcttcaatcttttgctatgtt |
205 |
Q |
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| T |
29600505 |
gcaacaaggattaaggtttctgtcttttttttctttcttttttccttaccttggtttcctcgaaaacccatcaagtaaagcttcaatcttttgctatgtt |
29600604 |
T |
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| Q |
206 |
tctgtggtttattcatcactgaatgttagctatagtaatgggtacacttaa |
256 |
Q |
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| T |
29600605 |
tctgtggtttattcatcactgaatgttagctatagtaatgggtactcttaa |
29600655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 415 - 517
Target Start/End: Original strand, 405992 - 406094
Alignment:
| Q |
415 |
tgttcattaagctttcccttttacttgttgattgttgtctttgatcttgagtgaattgttcaatgtccttttctttctctcaattttggaatagataggg |
514 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||| | || ||||| |||||| ||||||||||||||||| || |
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| T |
405992 |
tgttcattaagctctcccttttacttgttgattgttgtctttactcttgagtaatttgttgagtgccctttactttcttccaattttggaatagataagg |
406091 |
T |
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| Q |
515 |
ttt |
517 |
Q |
| |
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||| |
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| T |
406092 |
ttt |
406094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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