View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_25 (Length: 543)
Name: NF8991_low_25
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Original strand, 42520240 - 42520748
Alignment:
| Q |
19 |
taaatatgatagatactatgcaaggaagttttattggaggacatggatgtatctaaggcaatcatagaaggtattagagaatattccattgaacttttgg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520240 |
taaatatgatagatactatgcaaggaagttttattggaggacatggatgtatctaaggcaatcatagaaggtattagagaatattccattgaacttttgg |
42520339 |
T |
|
| Q |
119 |
ttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattctgcacttcttaccaaatattagtccaaccaactatgnnnnnnnnnnnnnnnn |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520340 |
ttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattctgcacttcttaccaaatattagtccaaccaactatgaaaaataaaataaaaa |
42520439 |
T |
|
| Q |
219 |
ncatgcatgatcatttcaagaaaacgttagtttgagcaaaaaattaagatattttgaaccattttttattgtgtcggaacataacatattccattttttg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42520440 |
acatgcatgatcatttcaagaaaacgttagtttgagcaaaaaatgaagatattttgaacc-ttttttattgtgtcggaacataacatattccattttttg |
42520538 |
T |
|
| Q |
319 |
atgaattttaattcatgacagaagatt-aggacaagtgatgttcctagccttgtgtctaaaggggcacctgagttctgcaccgtgtacattatttccaaa |
417 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520539 |
atgaatttttattcatgacagaagatttaggacaagtgatgttcctagccttgtgtctaaaggggcacctgagttctgcaccgtgtacattatttccaaa |
42520638 |
T |
|
| Q |
418 |
ggaaaaatccaatccgttaaaactgctacttctccattaacaccgaaagccatgccgcgtaacaatgcattgcagccacaacaaagtcctgatagaatcg |
517 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520639 |
ggaaaaatccaatctgttaaaactgctacttctccattaacaccgaaagccatgccgcgtaacaatgcattgcagccacaacaaagtcctgatagaatca |
42520738 |
T |
|
| Q |
518 |
atgtacaaca |
527 |
Q |
| |
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|||||||||| |
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| T |
42520739 |
atgtacaaca |
42520748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Original strand, 42528416 - 42528939
Alignment:
| Q |
19 |
taaatatgatagatactatgcaaggaagttttattggaggacatggatgtatctaaggcaatcatagaaggtattagagaatattccattgaacttttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42528416 |
taaatatgatagatactatgcaaggaagttttattggaggacatggatgtatctaaggcaatcatagaaggtattagagaatattccattgaacttttgg |
42528515 |
T |
|
| Q |
119 |
ttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattctgcacttcttaccaaatattagtccaaccaactatgnnnnnnnnnnnnnnnn |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42528516 |
ttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattctgcacttcttaccaaatattagtccaaccaactatgaaaattaaaataaaaa |
42528615 |
T |
|
| Q |
219 |
ncatgcatgatcatttcaagaaaacgttagtttgagcaaaaaattaagatattttgaaccattttttattgtgtcggaacataacatattccattttttg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42528616 |
acatgcatgatcatttcaagaaaacgttagtttgagcaaaaaatgaagatattttgaaccattttttattgtgtcggaacataacatattcctttttttg |
42528715 |
T |
|
| Q |
319 |
atgaattttaattcatgacagaagatt-aggacaagtgatgttcctagccttgtgtctaaaggggcacctgagttctgcaccgtgtacattatttccaaa |
417 |
Q |
| |
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||||||| |||| ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
42528716 |
atgaattataatccataacagaagatttaggacaagtgatgttcctagcctcgtgtctaaaggggcacctgaattctgcactgtgtacattatttccaaa |
42528815 |
T |
|
| Q |
418 |
ggaaaaatccaatccgttaaaactgctacttctccattaacaccgaaagccatgccgcgtaa--caatg-------cattgcagccacaacaaagtcctg |
508 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||| || || || ||||||||||||||||||| |
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| T |
42528816 |
ggaaaaatccaatctgtaaaaactgctacttctccattaacattgaaagccatgccgcgtaatgcattgcagcctccacagcagccacaacaaagtccta |
42528915 |
T |
|
| Q |
509 |
atagaatcgatgtacaacaccaaa |
532 |
Q |
| |
|
||||||||||||||||||| |||| |
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|
| T |
42528916 |
atagaatcgatgtacaacaacaaa |
42528939 |
T |
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Back To:
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