View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_27 (Length: 530)
Name: NF8991_low_27
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Complemental strand, 37968225 - 37967733
Alignment:
| Q |
19 |
cacagaaatcgagccactaccttcaatttaaaacttccaaagtctattgaaacaaaaacacatgaaaaaggaatttcaacttacaattaatctcaatctc |
118 |
Q |
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| T |
37968225 |
cacagaaatcgagccactgccttcaatttaaaacttccaaagtctattgaaacaaaaacacatgaaaaaggaatttcaacttacaattaatctcaatctc |
37968126 |
T |
|
| Q |
119 |
tccatagtagatattgcaagtcgatcaccctgaaccttcaagttttccaaattcgcatagattctgctcaaaaccttatcaggtgtctcttcccccaaat |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37968125 |
tccatagtcgatattgcaagtcgatcaccctgaaccttcaagttttccaaattcgcatagattctgctcaaaaccttatcaggtgtctcttcccccaaat |
37968026 |
T |
|
| Q |
219 |
caaacacctaaacaaacacacacaagctcaattcattccttcataataaaaacatatgaagnnnnnnnnnnnngatgcccgacacgagactaacatgtcg |
318 |
Q |
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| T |
37968025 |
caaacacctaaacaaacacacacaagctcaattcattccttcataataaaaacatatgaag--cacacacacagatgcccgacacgagactaacatgtcg |
37967928 |
T |
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| Q |
319 |
acaatatcaatagttttaaaaaatggcataattgagtgtaatcacatgtgtcaagtgtcctgttggtggtaaaca---catcagaagtgtcgttgctaca |
415 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
37967927 |
acaatgtcaatagttttaaaaaatggcataattgagtgtaatcacatgtgtcaagtgtcctgttggtcataaacacatcatcagaagtgtcgttgctaca |
37967828 |
T |
|
| Q |
416 |
aaacaaaaactc-taacaatctagaagannnnnnnnnacctgtttatctttaagaactgcacgataggttttcaagagttcaccacctaactgac |
509 |
Q |
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| T |
37967827 |
aaacaaaaactcttaacaatctagaagaattttttttacctgtttatctttaagaactgcacgataggttttcaagagttcaccacctaactgac |
37967733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Complemental strand, 46550832 - 46550797
Alignment:
| Q |
336 |
aaaaaatggcataattgagtgtaatcacatgtgtca |
371 |
Q |
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| T |
46550832 |
aaaaaatgacataattgagtgtaatcacatgtgtca |
46550797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 43093575 - 43093534
Alignment:
| Q |
327 |
aatagttttaaaaaatggcataattgagtgtaatcacatgtg |
368 |
Q |
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| T |
43093575 |
aataatttgaaaaaatggcataattgaatgtaatcacatgtg |
43093534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 5075395 - 5075363
Alignment:
| Q |
340 |
aatggcataattgagtgtaatcacatgtgtcaa |
372 |
Q |
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| T |
5075395 |
aatggcataattgaatgtaatcacatgtgtcaa |
5075363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 31901318 - 31901286
Alignment:
| Q |
336 |
aaaaaatggcataattgagtgtaatcacatgtg |
368 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
31901318 |
aaaaaatggcataattgaatgtaatcacatgtg |
31901286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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