View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_low_29 (Length: 501)

Name: NF8991_low_29
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_low_29
NF8991_low_29
[»] chr5 (8 HSPs)
chr5 (18-386)||(1739733-1740101)
chr5 (26-180)||(1745081-1745235)
chr5 (18-183)||(1725378-1725543)
chr5 (407-456)||(1740176-1740225)
chr5 (226-325)||(1745349-1745444)
chr5 (90-201)||(1715371-1715480)
chr5 (60-174)||(1760835-1760949)
chr5 (110-165)||(1763952-1764007)
[»] chr3 (3 HSPs)
chr3 (92-201)||(3167858-3167968)
chr3 (141-201)||(2023458-2023518)
chr3 (93-201)||(3138591-3138703)
[»] chr7 (1 HSPs)
chr7 (60-175)||(7498369-7498486)


Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 1739733 - 1740101
Alignment:
Q  18 actactaccaaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739733 actactaccaaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaa 1739832  T
Q  118 ttcaatttttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagttgaatttatgttttgatatttaattgtttgttgctgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739833 ttcaatttttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagttgaatttatgttttgatatttaattgtttgttgctgtt 1739932  T
Q  218 aaattagcatatacatttagaagagcaattattagaacttatcatgttttgattgcttccttgatgaagttattttaatatatatctatgataaatgcat 317  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739933 aaattagtatatacatttagaagagcaaatattagaacttatcatgttttgattgcttccttgatgaagttattttaatatatatctatgataaatgcat 1740032  T
Q  318 attgcaatttatttccaatgccagttttacacaaacatcttccatgtcttgtttatcaacttggtggat 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1740033 attgcaatttatttccaatgccagttttacacaaacatcttccatgtcttgtttatcaacttggtggat 1740101  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 1745081 - 1745235
Alignment:
Q  26 caaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaattcaattt 125  Q
    ||||||| |||||||| |||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1745081 caaggatgatattgatttgtcgaagttcaacgcagaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaattcagttt 1745180  T
Q  126 ttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagtt 180  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  1745181 ttatattttgttttcatggcaatgttgctgttaatttgattgctactctctagtt 1745235  T

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Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 1725378 - 1725543
Alignment:
Q  18 actactaccaaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaa 117  Q
    ||||| ||||||||| |||||||| |||| ||||| ||  | |||||||||||||||||||||||||| | |||||||||||| ||||| || |||||||    
T  1725378 actaccaccaaggatgatattgatatgtcgaagttcaaagctgaagaagaatcctccaattatgattcatgtgggcttgatttgtcactaagactttaaa 1725477  T
Q  118 ttcaatttttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagttgaa 183  Q
    || | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  1725478 tttagtttttatattttgttttcatgtcaatgttgctgctgatttgattgatactctctatttgaa 1725543  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 1740176 - 1740225
Alignment:
Q  407 ttcgactgaccttgaaatttacgacacttgcacaccttgcgcgccgacta 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1740176 ttcgactgaccttgaaatttacgacacttgcacaccttgcgcgccgacta 1740225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 1745349 - 1745444
Alignment:
Q  226 atatacatttagaagagcaattattagaacttatcatgttttgattgcttccttgatgaagttattttaatatatatctatgataaatgcatattgcaat 325  Q
    ||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||| ||| | |||||    ||||||||||  |||||||||||||||    
T  1745349 atatatatttagaaaagcaattattagtatttatcatgttttgattgcttccttgattaaggtttttta----atatctatgacgaatgcatattgcaat 1745444  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 1715480 - 1715371
Alignment:
Q  90 gggcttgatttatcacttaggctttaaattcaatttttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagttgaatttatg 189  Q
    ||||||||||| ||||||| ||| ||| |||| |||| ||||||||||| ||||||||||||  |||| ||||||||| ||||||||||| ||| |||||    
T  1715480 gggcttgatttgtcacttaagctctaa-ttcagtttt-atattttgtttccatgtcaatgttattgttaatttgattgttactctctagtggaacttatg 1715383  T
Q  190 ttttgatattta 201  Q
    | ||| ||||||    
T  1715382 tcttggtattta 1715371  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 1760835 - 1760949
Alignment:
Q  60 gaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaattcaatttttatattttgttttc-atgtcaatgttgctgttg 158  Q
    |||||||||||||||||||  || || | || ||||||||||||||||| ||||||||||| | |||||||||||||||||  |||||||||   ||||     
T  1760835 gaagaagaatcctccaattcggaatcttatgcgcttgatttatcacttaagctttaaattc-agttttatattttgttttctgtgtcaatgtcattgtta 1760933  T
Q  159 atttgattgctactct 174  Q
    |||| |||||||||||    
T  1760934 atttaattgctactct 1760949  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 1763952 - 1764007
Alignment:
Q  110 gctttaaattcaatttttatattttgttttcatgtcaatgttgctgttgatttgat 165  Q
    |||||||||||| |||||||||||||||| |||||| |||||  |||| |||||||    
T  1763952 gctttaaattcagtttttatattttgtttccatgtcgatgttattgttaatttgat 1764007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 3167858 - 3167968
Alignment:
Q  92 gcttgatttatcacttaggctttaaattcaatttttatattttgttttcat--gtcaatgttgctgttgatttgattgctactctctagttgaatttatg 189  Q
    ||||||||||||||| | ||||||| || ||||||| |||||||||| |||  |||||||||  |||| ||||||||||||||||| ||||||| ||||     
T  3167858 gcttgatttatcactcaagctttaa-ttaaatttttgtattttgtttccataagtcaatgttcttgttaatttgattgctactctccagttgaagttatt 3167956  T
Q  190 ttttgatattta 201  Q
    | ||| ||||||    
T  3167957 tcttggtattta 3167968  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 2023458 - 2023518
Alignment:
Q  141 atgtcaatgttgctgttgatttgattgctactctctagttgaatttatgttttgatattta 201  Q
    |||||||||||  |||| ||||||||||||||||||||||||| |||| | ||||| ||||    
T  2023458 atgtcaatgttcttgttaatttgattgctactctctagttgaagttatttcttgatgttta 2023518  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 3138703 - 3138591
Alignment:
Q  93 cttgatttatcacttaggctttaaattcaatttttatattt----tgttttcat--gtcaatgttgctgttgatttgattgctactctctagttgaattt 186  Q
    |||||||||||||||| |||||||||  || |||||| |||    ||||| |||  |||||||||  |||| ||||||||||||||||||||||||| ||    
T  3138703 cttgatttatcacttaagctttaaat--aagttttatgtttaatttgtttccataagtcaatgtttttgttcatttgattgctactctctagttgaagtt 3138606  T
Q  187 atgttttgatattta 201  Q
    || | ||| ||||||    
T  3138605 atttcttggtattta 3138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 7498486 - 7498369
Alignment:
Q  60 gaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaa--attcaatttttatattttgttttcatgtcaatgttgctgtt 157  Q
    ||||||||| ||||| |||  ||||||||||| || || ||| ||||||||||||||  |||||  ||||| ||||||||  ||| ||||||||   |||    
T  7498486 gaagaagaaccctccgatttggattcgtctggactcgacttaacacttaggctttaaatattcatgttttacattttgttcccatctcaatgttatggtt 7498387  T
Q  158 gatttgattgctactctc 175  Q
     |||| ||||||||||||    
T  7498386 aattttattgctactctc 7498369  T

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