View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_low_30 (Length: 501)

Name: NF8991_low_30
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_low_30
NF8991_low_30
[»] chr5 (8 HSPs)
chr5 (18-386)||(1739733-1740101)
chr5 (26-180)||(1745081-1745235)
chr5 (18-183)||(1725378-1725543)
chr5 (407-456)||(1740176-1740225)
chr5 (226-325)||(1745349-1745444)
chr5 (90-201)||(1715371-1715480)
chr5 (60-174)||(1760835-1760949)
chr5 (110-165)||(1763952-1764007)
[»] chr3 (3 HSPs)
chr3 (92-201)||(3167858-3167968)
chr3 (141-201)||(2023458-2023518)
chr3 (93-201)||(3138591-3138703)
[»] chr7 (1 HSPs)
chr7 (60-175)||(7498369-7498486)


Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 1739733 - 1740101
Alignment:
Q  18 actactaccaaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739733 actactaccaaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaa 1739832  T
Q  118 ttcaatttttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagttgaatttatgttttgatatttaattgtttgttgctgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739833 ttcaatttttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagttgaatttatgttttgatatttaattgtttgttgctgtt 1739932  T
Q  218 aaattagcatatacatttagaagagcaattattagaacttatcatgttttgattgcttccttgatgaagttattttaatatatatctatgataaatgcat 317  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739933 aaattagtatatacatttagaagagcaaatattagaacttatcatgttttgattgcttccttgatgaagttattttaatatatatctatgataaatgcat 1740032  T
Q  318 attgcaatttatttccaatgccagttttacacaaacatcttccatgtcttgtttatcaacttggtggat 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1740033 attgcaatttatttccaatgccagttttacacaaacatcttccatgtcttgtttatcaacttggtggat 1740101  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 1745081 - 1745235
Alignment:
Q  26 caaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaattcaattt 125  Q
    ||||||| |||||||| |||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1745081 caaggatgatattgatttgtcgaagttcaacgcagaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaattcagttt 1745180  T
Q  126 ttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagtt 180  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  1745181 ttatattttgttttcatggcaatgttgctgttaatttgattgctactctctagtt 1745235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 1725378 - 1725543
Alignment:
Q  18 actactaccaaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaa 117  Q
    ||||| ||||||||| |||||||| |||| ||||| ||  | |||||||||||||||||||||||||| | |||||||||||| ||||| || |||||||    
T  1725378 actaccaccaaggatgatattgatatgtcgaagttcaaagctgaagaagaatcctccaattatgattcatgtgggcttgatttgtcactaagactttaaa 1725477  T
Q  118 ttcaatttttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagttgaa 183  Q
    || | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  1725478 tttagtttttatattttgttttcatgtcaatgttgctgctgatttgattgatactctctatttgaa 1725543  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 1740176 - 1740225
Alignment:
Q  407 ttcgactgaccttgaaatttacgacacttgcacaccttgcgcgccgacta 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1740176 ttcgactgaccttgaaatttacgacacttgcacaccttgcgcgccgacta 1740225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 1745349 - 1745444
Alignment:
Q  226 atatacatttagaagagcaattattagaacttatcatgttttgattgcttccttgatgaagttattttaatatatatctatgataaatgcatattgcaat 325  Q
    ||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||| ||| | |||||    ||||||||||  |||||||||||||||    
T  1745349 atatatatttagaaaagcaattattagtatttatcatgttttgattgcttccttgattaaggtttttta----atatctatgacgaatgcatattgcaat 1745444  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 1715480 - 1715371
Alignment:
Q  90 gggcttgatttatcacttaggctttaaattcaatttttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagttgaatttatg 189  Q
    ||||||||||| ||||||| ||| ||| |||| |||| ||||||||||| ||||||||||||  |||| ||||||||| ||||||||||| ||| |||||    
T  1715480 gggcttgatttgtcacttaagctctaa-ttcagtttt-atattttgtttccatgtcaatgttattgttaatttgattgttactctctagtggaacttatg 1715383  T
Q  190 ttttgatattta 201  Q
    | ||| ||||||    
T  1715382 tcttggtattta 1715371  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 1760835 - 1760949
Alignment:
Q  60 gaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaattcaatttttatattttgttttc-atgtcaatgttgctgttg 158  Q
    |||||||||||||||||||  || || | || ||||||||||||||||| ||||||||||| | |||||||||||||||||  |||||||||   ||||     
T  1760835 gaagaagaatcctccaattcggaatcttatgcgcttgatttatcacttaagctttaaattc-agttttatattttgttttctgtgtcaatgtcattgtta 1760933  T
Q  159 atttgattgctactct 174  Q
    |||| |||||||||||    
T  1760934 atttaattgctactct 1760949  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 1763952 - 1764007
Alignment:
Q  110 gctttaaattcaatttttatattttgttttcatgtcaatgttgctgttgatttgat 165  Q
    |||||||||||| |||||||||||||||| |||||| |||||  |||| |||||||    
T  1763952 gctttaaattcagtttttatattttgtttccatgtcgatgttattgttaatttgat 1764007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 3167858 - 3167968
Alignment:
Q  92 gcttgatttatcacttaggctttaaattcaatttttatattttgttttcat--gtcaatgttgctgttgatttgattgctactctctagttgaatttatg 189  Q
    ||||||||||||||| | ||||||| || ||||||| |||||||||| |||  |||||||||  |||| ||||||||||||||||| ||||||| ||||     
T  3167858 gcttgatttatcactcaagctttaa-ttaaatttttgtattttgtttccataagtcaatgttcttgttaatttgattgctactctccagttgaagttatt 3167956  T
Q  190 ttttgatattta 201  Q
    | ||| ||||||    
T  3167957 tcttggtattta 3167968  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 2023458 - 2023518
Alignment:
Q  141 atgtcaatgttgctgttgatttgattgctactctctagttgaatttatgttttgatattta 201  Q
    |||||||||||  |||| ||||||||||||||||||||||||| |||| | ||||| ||||    
T  2023458 atgtcaatgttcttgttaatttgattgctactctctagttgaagttatttcttgatgttta 2023518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 3138703 - 3138591
Alignment:
Q  93 cttgatttatcacttaggctttaaattcaatttttatattt----tgttttcat--gtcaatgttgctgttgatttgattgctactctctagttgaattt 186  Q
    |||||||||||||||| |||||||||  || |||||| |||    ||||| |||  |||||||||  |||| ||||||||||||||||||||||||| ||    
T  3138703 cttgatttatcacttaagctttaaat--aagttttatgtttaatttgtttccataagtcaatgtttttgttcatttgattgctactctctagttgaagtt 3138606  T
Q  187 atgttttgatattta 201  Q
    || | ||| ||||||    
T  3138605 atttcttggtattta 3138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 7498486 - 7498369
Alignment:
Q  60 gaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaa--attcaatttttatattttgttttcatgtcaatgttgctgtt 157  Q
    ||||||||| ||||| |||  ||||||||||| || || ||| ||||||||||||||  |||||  ||||| ||||||||  ||| ||||||||   |||    
T  7498486 gaagaagaaccctccgatttggattcgtctggactcgacttaacacttaggctttaaatattcatgttttacattttgttcccatctcaatgttatggtt 7498387  T
Q  158 gatttgattgctactctc 175  Q
     |||| ||||||||||||    
T  7498386 aattttattgctactctc 7498369  T

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