View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_33 (Length: 462)
Name: NF8991_low_33
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Original strand, 48500198 - 48500629
Alignment:
| Q |
15 |
actttccccctccttttgtggttgattaaatttgaaaggaggtgtttcatataattattcacattcagggtaattttccatgaattagaggcaaatcaac |
114 |
Q |
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| T |
48500198 |
actttccccctccttttgtggttgatttaatttgaaaggaggtgtttcatataattattcacattcagggtaattttccatgaattagaggcaaatcaac |
48500297 |
T |
|
| Q |
115 |
ttcatcacaccactcaatacatctagtttcaaaatgactcccttttgcttggtccggcaagtaactaacccaaaattctccccctatcctccacttcaac |
214 |
Q |
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| T |
48500298 |
ttcatcacaccactcaatacatctagtttcaaaatgactcccttttgcttggtccggcaagtaactaacccaaaattctccccctatcctccacttcaac |
48500397 |
T |
|
| Q |
215 |
acactcccttccatctctttacttaacctccaccctacttcttctccgtattcatcccctgctattacaaccgacccgctcttactaaacggtctatttg |
314 |
Q |
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| T |
48500398 |
acactcccttccatctctttacttaacctccaccctacttcttctccgtattcatcccctgctattacaaccgacccgctcttactaaacggtctatttg |
48500497 |
T |
|
| Q |
315 |
ccccgacatatcgccccctcaacccatgaatcgggtcatcacctgtgggcttccacgagcccacttcttggcccgtcatattatcatgcaaaacaacatc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48500498 |
ccccgacatatcgccccctcaacccatgaatcgggtcatcacctgtgggcttccacgagcccacttcttggcccgtcatattatcatgcaaaacaacatc |
48500597 |
T |
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| Q |
415 |
aaatatagctgcgttcccctccgcgtcttgat |
446 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
48500598 |
aaatatagctgcgttcccctccgcgtcttgat |
48500629 |
T |
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