View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_35 (Length: 457)
Name: NF8991_low_35
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 30 - 457
Target Start/End: Complemental strand, 7128479 - 7128052
Alignment:
| Q |
30 |
acagaaaatcatagccattgtagcactgaaaattgatcgaatgtgtgtcgtgtcccacttgcatcaatgtttaataccgacacgacactgacgcatgtga |
129 |
Q |
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| T |
7128479 |
acagaaaatcatagcctttgtagcactgataattgatcgaatgtgtgtcgtgtcccacttgcatcattgtttaataccgacacgacactgacgcatgtga |
7128380 |
T |
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| Q |
130 |
taacatttaatttatgtcattttgtttgacttcttattatgacagttagggatagttatcatgtcagttgtgattatgggatatttaccgagtggcggct |
229 |
Q |
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| T |
7128379 |
taacatttaatttatgtcattttgcttgacttcttattatgacagttagggatagttatcatgtcagttgtgattatgggatatttaccgagtggcggct |
7128280 |
T |
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| Q |
230 |
atgagagggagagaccaagctctagaattattgcaagggacagatcaagactattgaatttcttgactagtgtgtgtaaatgtttagaccatctctttct |
329 |
Q |
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| T |
7128279 |
atgagagggagagaccaagctctagaattattgcaagggacagatcaagactattgaatttcttgactagcgtgtgtaaatgtttagaccatctctttct |
7128180 |
T |
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| Q |
330 |
tggataacaacagactatcttaaaagtgaggcagataggaagcaaacaagatccaacggaagagatagacttttattagcaacaattccgtagattaaag |
429 |
Q |
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| T |
7128179 |
tggataacaacagactatcttaaaagtgaggcagataggaagcaaacaagatccaacggaagagatagacttttattagcaacaattccgtagattaaag |
7128080 |
T |
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| Q |
430 |
tgatcagagagagagaaaaatgtacacg |
457 |
Q |
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| T |
7128079 |
tgatcagagagagagaaaaatgtacacg |
7128052 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 13218802 - 13218744
Alignment:
| Q |
236 |
gggagagaccaagctctagaattattgcaagggacagatcaagactattgaatttcttg |
294 |
Q |
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| T |
13218802 |
gggagagaccaagctctcgaattcttgcaagggagagacccaaactcttgaatttcttg |
13218744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 27869374 - 27869435
Alignment:
| Q |
235 |
agggagagaccaagctctagaattattgcaagggacagat-caagactattgaatttcttga |
295 |
Q |
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| T |
27869374 |
agggagagaccaagctcttgaattcttggaagggagagatgcaagactctcgaatttcttga |
27869435 |
T |
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