View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_37 (Length: 446)
Name: NF8991_low_37
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 419
Target Start/End: Complemental strand, 46307912 - 46307500
Alignment:
| Q |
6 |
aggagcacagatgtcagaaagtgaatcatcagatcaaaaggaaattgacgcgatttttatgaga--taaaaggtaactttgaaaatttttggaatagttg |
103 |
Q |
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| T |
46307912 |
aggagcccaaatgtcgtaaagtgaatcatcagatcaaa-ggaaattgacgcgatttttatgagagataaaaggtaactttgaaaatttt-ggaatagttg |
46307815 |
T |
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| Q |
104 |
aaatttgacaagaatgagattgaaattttgcacgtaatgtgaaaggaaatttatctgtaacaattttgagtatatgatcagacaagtgaccaagtctata |
203 |
Q |
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| T |
46307814 |
aaatttgacaggaatgagattgaaattttgcacgtaatgtgaaaggaaatttatctgtaacaattttgagtatatgatcagacaagtgaccaagtctata |
46307715 |
T |
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| Q |
204 |
atctaatgcctcattggttggctatataatagtttatagaagtacaaggaaaactaaactcttcatttgaactaatgcaactacaatttggtaaggaaac |
303 |
Q |
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| T |
46307714 |
atctaatgc-tcattggttggccatataatagtttatagaagtacaaggaaaactaaactcttcatttgaactaatgcaactacaatttggtaaggaaac |
46307616 |
T |
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| Q |
304 |
attacacaaagcagattaattcctattggtatagacatagagtccttgattcatattacccctgccaatcaccttcacttaatgcttgttttgaagcaag |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46307615 |
attacacaaagcagattaattcctattggtatagacatagagtccttgattcatattacccctgccaatcaccttcacttaatgcttgttttgaagcaag |
46307516 |
T |
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| Q |
404 |
aaatcaagtttataac |
419 |
Q |
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|||||||||||||||| |
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| T |
46307515 |
aaatcaagtttataac |
46307500 |
T |
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