View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_low_4 (Length: 943)

Name: NF8991_low_4
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_low_4
NF8991_low_4
[»] chr6 (18 HSPs)
chr6 (384-921)||(33216217-33216756)
chr6 (11-285)||(33215175-33215452)
chr6 (29-118)||(1127224-1127313)
chr6 (21-118)||(27822140-27822238)
chr6 (21-114)||(14238410-14238503)
chr6 (36-118)||(8049003-8049084)
chr6 (18-118)||(12882092-12882193)
chr6 (21-118)||(18727865-18727964)
chr6 (22-82)||(3536040-3536099)
chr6 (21-81)||(18727115-18727174)
chr6 (12-82)||(33693840-33693910)
chr6 (22-118)||(11658901-11658997)
chr6 (29-82)||(29340837-29340889)
chr6 (29-82)||(30052209-30052261)
chr6 (33-118)||(33615538-33615623)
chr6 (22-82)||(3542251-3542310)
chr6 (22-82)||(30049922-30049981)
chr6 (32-101)||(22873801-22873870)
[»] chr7 (28 HSPs)
chr7 (30-118)||(24840113-24840201)
chr7 (11-119)||(1369774-1369882)
chr7 (29-118)||(6451780-6451869)
chr7 (32-118)||(27142636-27142722)
chr7 (21-118)||(11000848-11000945)
chr7 (29-113)||(4888716-4888799)
chr7 (22-82)||(27309638-27309698)
chr7 (21-82)||(1883495-1883556)
chr7 (21-82)||(5934610-5934671)
chr7 (30-82)||(1753629-1753681)
chr7 (22-82)||(1874544-1874604)
chr7 (30-118)||(11228951-11229039)
chr7 (160-227)||(18790362-18790429)
chr7 (32-118)||(8916410-8916496)
chr7 (21-118)||(11228690-11228788)
chr7 (21-109)||(30217794-30217880)
chr7 (22-82)||(859180-859239)
chr7 (22-82)||(1217184-1217243)
chr7 (22-82)||(13882710-13882769)
chr7 (22-82)||(13886183-13886242)
chr7 (51-114)||(3778760-3778823)
chr7 (21-118)||(1365641-1365738)
chr7 (214-267)||(1785621-1785675)
chr7 (21-119)||(4133296-4133394)
chr7 (21-63)||(13466756-13466798)
chr7 (32-101)||(7803064-7803133)
chr7 (30-118)||(1786653-1786741)
chr7 (20-118)||(35814841-35814938)
[»] chr2 (23 HSPs)
chr2 (21-118)||(23457616-23457713)
chr2 (32-118)||(23456545-23456631)
chr2 (23-116)||(32161993-32162086)
chr2 (21-118)||(33051588-33051685)
chr2 (29-118)||(5171615-5171704)
chr2 (51-120)||(8294546-8294615)
chr2 (21-82)||(36647299-36647359)
chr2 (22-118)||(21772345-21772440)
chr2 (22-82)||(27952342-27952401)
chr2 (22-82)||(27956178-27956237)
chr2 (22-82)||(31634110-31634169)
chr2 (44-114)||(12123941-12124011)
chr2 (38-118)||(4184898-4184979)
chr2 (21-82)||(15129396-15129456)
chr2 (22-107)||(18945941-18946026)
chr2 (22-82)||(2155973-2156032)
chr2 (22-82)||(22011442-22011501)
chr2 (22-70)||(29715168-29715216)
chr2 (22-82)||(31636343-31636402)
chr2 (22-82)||(33655634-33655693)
chr2 (32-82)||(32163804-32163854)
chr2 (55-118)||(36615178-36615243)
chr2 (21-82)||(28737912-28737972)
[»] chr4 (21 HSPs)
chr4 (33-118)||(10494873-10494958)
chr4 (21-118)||(13991401-13991498)
chr4 (23-118)||(15848375-15848469)
chr4 (32-118)||(7634050-7634136)
chr4 (29-119)||(18689551-18689641)
chr4 (21-78)||(54700619-54700676)
chr4 (21-118)||(7724099-7724193)
chr4 (21-119)||(17254905-17255003)
chr4 (21-118)||(22486798-22486893)
chr4 (25-82)||(38888016-38888073)
chr4 (11-82)||(50515907-50515978)
chr4 (22-118)||(53477235-53477333)
chr4 (38-118)||(3675081-3675161)
chr4 (22-82)||(6659354-6659413)
chr4 (50-118)||(13990728-13990796)
chr4 (31-119)||(18657074-18657162)
chr4 (167-229)||(26974834-26974896)
chr4 (21-82)||(7723686-7723745)
chr4 (39-116)||(9260545-9260622)
chr4 (21-114)||(40206123-40206215)
chr4 (160-229)||(53477384-53477453)
[»] chr1 (16 HSPs)
chr1 (22-105)||(28660769-28660852)
chr1 (21-118)||(10927164-10927259)
chr1 (21-118)||(12944086-12944183)
chr1 (46-118)||(31915519-31915592)
chr1 (29-118)||(50713683-50713772)
chr1 (21-118)||(10928259-10928356)
chr1 (10-106)||(31913359-31913454)
chr1 (21-116)||(43681433-43681529)
chr1 (36-119)||(33152756-33152841)
chr1 (30-118)||(8221458-8221546)
chr1 (22-82)||(8931226-8931285)
chr1 (26-118)||(9194970-9195061)
chr1 (11-118)||(10925710-10925814)
chr1 (21-82)||(28661090-28661151)
chr1 (31-82)||(13444021-13444071)
chr1 (216-265)||(8968031-8968081)
[»] chr8 (21 HSPs)
chr8 (21-118)||(24731197-24731294)
chr8 (22-118)||(25479427-25479524)
chr8 (32-118)||(20693769-20693855)
chr8 (32-118)||(14130135-14130221)
chr8 (22-118)||(16598218-16598315)
chr8 (18-118)||(2687712-2687812)
chr8 (39-118)||(2689117-2689195)
chr8 (22-109)||(18468628-18468714)
chr8 (21-120)||(2189744-2189844)
chr8 (25-118)||(24577554-24577647)
chr8 (29-118)||(24578807-24578896)
chr8 (21-82)||(42890398-42890458)
chr8 (21-82)||(42891687-42891747)
chr8 (22-82)||(23570590-23570649)
chr8 (29-82)||(22926679-22926731)
chr8 (21-82)||(24731038-24731099)
chr8 (21-118)||(26374870-26374966)
chr8 (22-82)||(22512070-22512129)
chr8 (22-82)||(22519370-22519429)
chr8 (22-82)||(22921874-22921933)
chr8 (211-265)||(2688971-2689026)
[»] chr3 (7 HSPs)
chr3 (21-114)||(2472711-2472803)
chr3 (22-82)||(43303984-43304043)
chr3 (29-82)||(5128915-5128967)
chr3 (46-118)||(2107901-2107972)
chr3 (22-82)||(43306696-43306755)
chr3 (30-81)||(45168351-45168401)
chr3 (21-82)||(33175841-33175902)
[»] scaffold0110 (1 HSPs)
scaffold0110 (23-109)||(46758-46844)
[»] chr5 (7 HSPs)
chr5 (51-118)||(18252386-18252453)
chr5 (21-79)||(492576-492634)
chr5 (22-103)||(8456402-8456483)
chr5 (22-118)||(26140313-26140409)
chr5 (22-114)||(19497327-19497419)
chr5 (22-82)||(21848989-21849048)
chr5 (29-82)||(40778817-40778869)
[»] scaffold0251 (1 HSPs)
scaffold0251 (21-118)||(9672-9770)
[»] scaffold0054 (1 HSPs)
scaffold0054 (29-107)||(37693-37769)
[»] scaffold0240 (1 HSPs)
scaffold0240 (21-114)||(1632-1724)
[»] scaffold0024 (1 HSPs)
scaffold0024 (21-70)||(145752-145801)
[»] scaffold0531 (1 HSPs)
scaffold0531 (36-82)||(11626-11671)
[»] scaffold0330 (1 HSPs)
scaffold0330 (21-82)||(17646-17706)


Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 384 - 921
Target Start/End: Original strand, 33216217 - 33216756
Alignment:
Q  384 ctattccatatattttgtttttaccataatctactattctaccatttttgtccttatgctttattttgttatatcacttacaatgatatgccattgctat 483  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33216217 ctattccatatattttgtttttaccataatctactattctcccatttttgtccttatgctttattttgttataccacttacaatgatatgccattgctat 33216316  T
Q  484 caatgtttaacagaagacagtgattttttcagtttatatagaaacaaaacaaactgaacacaaacctcagacagaaccttctctattcatcaaaacaaaa 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33216317 caatgtttaacagaagacagtgattttttcagtttatatagaaacaaaacaaactgaacacaaacctcagacagaaccttctctattcatcaatacaaaa 33216416  T
Q  584 cttcaaacttctttgtttttccactattcaannnnnnnnnnnnnnnnnnn--atcattatttttctttatactaaagttgttttgcaaactgaagttaaa 681  Q
    |||||||||||||||||||||||||||||||                     |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  33216417 cttcaaacttctttgtttttccactattcaactctctctctctctctctctcatcattgtttttctttatactaaagtagttttgcaaactgaagttaaa 33216516  T
Q  682 gtttccactactacaatggaaagttctgagatattttctcaaagaagtaacaatggcttgaacctcaaggctactgagttaagacttggtttacctggtt 781  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33216517 gtttccactactacaatggaaagttctgagatattttctcaaagaagtaacaatggcttgaacctcaaggctactgagttaagacttggtttacctggtt 33216616  T
Q  782 ctgaatcaccagagagagataatgatcttcttgaagnnnnnnntgcatactctttatgcatgcttaatagtttattttcaggtgcaaaaagaggtttttc 881  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33216617 ctgaatcaccagagagagataatgatcttcttgaagaaaaaaatgcatactctttatgcatgcttaatagtttattttcaggtgcaaaaagaggtttttc 33216716  T
Q  882 agatgccattgatatgagaagaagttccaaccaacaaggt 921  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  33216717 agatgccattgatatgagaaaaagttccaaccaacaaggt 33216756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 33215175 - 33215452
Alignment:
Q  11 gaagcagagactagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaa 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33215175 gaagcagagactagcaaacgctaaatctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaa 33215274  T
Q  111 aaaactctaat-aataaaac--tctctctggctacaactgaagtgtttaaactttaaacactaaggaaaccctaatgaaccgaaaaactagaacagaaaa 207  Q
    ||||||||||| ||||||||  ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||| |||||||||    
T  33215275 aaaactctaatgaataaaacagtctctctagctacaactgaagtgtgtaaactttaaacactaaggaaaccctaatgaatcgaaaacctaaaacagaaaa 33215374  T
Q  208 tacaacataaattattaaaattaggctcaataataatactaaagaaaccatcctacatcaaggtgtccaacatgaacc 285  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33215375 taaaacataaattattaaaattaggctcaataataatactaaagaaaccatcctacatcaaggtgtccaacatgaacc 33215452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 1127313 - 1127224
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||   ||| || ||| ||||| ||||||| ||||||||    
T  1127313 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaatttgtgaaaatagtgtttcggaatacaccaaaaattgagaaaactct 1127224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 27822140 - 27822238
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattga-aaaaactct 118  Q
    ||||||||||||||||||| ||  ||||| ||||||||| |||||||||||| ||||||||    |||||| ||||||||||||||||| |||||||||    
T  27822140 ctagcaaacgctaaacctaaatagaaaaggaacaagttttcaagcgacaaacttgtgaaaacagggttccgaaatccaccagaaattgagaaaaactct 27822238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 14238503 - 14238410
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaa 114  Q
    ||||||||| |||||| || ||| |||||||||||||||||||||||||||| ||||||||| | |||||| | |||| |||||| | ||||||    
T  14238503 ctagcaaacactaaacataaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaataaggttccggagtccatcagaaaataaaaaaa 14238410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 8049003 - 8049084
Alignment:
Q  36 cctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||||| | | ||||  |||||||||||||||| ||||||||    
T  8049003 cctagattaaaaagaaa-aagtttgcaagtgacaaacttgtgaaaataaggctccgggatccaccagaaattgagaaaactct 8049084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 12882193 - 12882092
Alignment:
Q  18 agactagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattga-aaaaact 116  Q
    |||||||||||| || |||||||||| | |||| ||||||||  ||||||||||| |||||||||   ||| || ||||||||||||||||| |||||||    
T  12882193 agactagcaaacactgaacctagattgagaagagacaagttttaaagcgacaaacttgtgaaaatagggtttcggaatccaccagaaattgagaaaaact 12882094  T
Q  117 ct 118  Q
    ||    
T  12882093 ct 12882092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 18727865 - 18727964
Alignment:
Q  21 ctagcaaacgctaaacctagatt-aaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaag-ttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||||||| |||||  ||||||||| |||||||||||| | ||| | |||||||  ||| ||||| ||||||||||||||||| ||||||||    
T  18727865 ctagcaaacgctaaacttagatagaaaaagaaataagtttgcaagcaataaatcggtgaaaaataaggttccgaaatccaccagaaattgagaaaactct 18727964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 3536099 - 3536040
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  3536099 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 3536040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 18727174 - 18727115
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaa 81  Q
    ||||||||||||||||||||||| |||| | ||||||| ||||||||||||| ||||||||    
T  18727174 ctagcaaacgctaaacctagattgaaaa-acacaagttcgcaagcgacaaacttgtgaaaa 18727115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 33693840 - 33693910
Alignment:
Q  12 aagcagagactagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||| ||| ||| |||| || |||| |||||| ||||||||||| ||||||||| ||||||||||||||||    
T  33693840 aagcggaggctaacaaatgcaaaacatagattgaaaagaaacaaatttgcaagcaacaaacctgtgaaaat 33693910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 11658997 - 11658901
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattga-aaaaactct 118  Q
    |||||| | ||||||||||||| ||||||| ||| ||||||||||| |||| |||||||||  ||||  | ||||||||| ||||||| |||||||||    
T  11658997 tagcaagcactaaacctagattgaaaagaa-caaatttgcaagcgataaacttgtgaaaatagagttttggaatccaccaaaaattgagaaaaactct 11658901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 29340837 - 29340889
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||||||||||  |||| ||||||||||||||||||||||| |||||||||    
T  29340837 cgctaaacctagatagaaaa-aaacaagtttgcaagcgacaaacttgtgaaaat 29340889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 30052261 - 30052209
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  30052261 cgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 30052209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 33615538 - 33615623
Alignment:
Q  33 aaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||||||  ||||  |||||||||||||||||||||| |||||||||   ||| |  ||| ||||| ||||||||||||||||    
T  33615538 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgaaaaaactct 33615623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 3542310 - 3542251
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||| ||||||||||| |||||||||    
T  3542310 tagcaagcgctaaacctagatagaaaagaa-caagtttgtaagcgacaaacttgtgaaaat 3542251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 30049981 - 30049922
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||| ||  ||||||| |||||||||||||||||||| |||||||||    
T  30049981 tagcaagcgctaaacctatatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 30049922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 22873870 - 22873801
Alignment:
Q  32 taaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccacca 101  Q
    |||||||| ||| |||||| ||||||||||| ||||||||| |||||||   | |||||| |||||||||    
T  22873870 taaacctaaattgaaaagagacaagtttgcatgcgacaaacttgtgaaataaaggttccggaatccacca 22873801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 24840201 - 24840113
Alignment:
Q  30 gctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||   |||||| ||||||||||||||||| ||||||||    
T  24840201 gctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaactct 24840113  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 1369882 - 1369774
Alignment:
Q  11 gaagcagagactagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaa 110  Q
    ||||| ||| ||||||| || |||||||||||| ||||||||||||||||||||||| |||| ||| |||||   |||||| |||||||||||||||||     
T  1369882 gaagcggaggctagcaagcgttaaacctagattgaaaagaaacaagtttgcaagcgataaacttgttaaaatagggttccggaatccaccagaaattgag 1369783  T
Q  111 aaaactcta 119  Q
    |||||||||    
T  1369782 aaaactcta 1369774  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 6451780 - 6451869
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| | ||| || |||||| || ||||||||||||||||    
T  6451780 cgctaaatctagattgaaaggaaacaagtttgcaagcgacaaacctgtgaaaataaggtttcggaatccaacaaaaattgaaaaaactct 6451869  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 27142722 - 27142636
Alignment:
Q  32 taaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||   |||||  || |||||||||||||| ||||||||    
T  27142722 taaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcctgaaaccaccagaaattgagaaaactct 27142636  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 11000848 - 11000945
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||||||||  ||||||||   |||| | ||||||||||||||||  ||||||||    
T  11000848 ctagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacaaactagtgaaaatagggttcaggaatccaccagaaattgggaaaactct 11000945  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 4888716 - 4888799
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaa 113  Q
    |||| |||||||||  ||||||| ||||||||||||||||||||||||||||||  ||||||| ||| |||||||||||||||||    
T  4888716 cgctgaacctagatagaaaagaa-caagtttgcaagcgacaaacctgtgaaaatagagttccggaattcaccagaaattgaaaaa 4888799  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 27309638 - 27309698
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  27309638 tagcaagcgctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaat 27309698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 1883556 - 1883495
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  1883556 ctagcaaacactaaacctagattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaat 1883495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 5934671 - 5934610
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  5934671 ctagcaagcgctaaacctagattgaaaagaaacaaatttgcaagcgacaaacttgtgaaaat 5934610  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 1753629 - 1753681
Alignment:
Q  30 gctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  1753629 gctaaacctaaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaat 1753681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 1874604 - 1874544
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||||| |||||||| |||| ||||||||||||||||||| |||||||| |||||||||    
T  1874604 tagcaaacactaaaccttgattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaat 1874544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 11229039 - 11228951
Alignment:
Q  30 gctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||||| ||||  |||||||||||| ||||||||| ||||||||    |||||  ||||||||||||||||| ||||||||    
T  11229039 gctaaacctagattgaaaaagaacaagtttgcaggcgacaaacgtgtgaaaaaagggttccagaatccaccagaaattgataaaactct 11228951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 18790362 - 18790429
Alignment:
Q  160 tttaaacactaaggaaaccctaatgaaccgaaaaactagaacagaaaatacaacataaattattaaaa 227  Q
    |||||| ||||| ||||||||||||||||||||| | | ||||||||||| |||| ||||||||||||    
T  18790362 tttaaatactaaagaaaccctaatgaaccgaaaatccaaaacagaaaataaaacaaaaattattaaaa 18790429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 8916410 - 8916496
Alignment:
Q  32 taaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||| ||||  ||||||||||||| ||| |||| |||| ||||  ||||| | ||||||||||||||||| ||||||||    
T  8916410 taaacctagatttaaaatgaacaagtttgcaaacgataaacttgtggaaatagagttctggaatccaccagaaattgagaaaactct 8916496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 11228788 - 11228690
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccag-aaattgaaaaaactct 118  Q
    ||||||||| |||||||| ||| ||||||||||||||||| ||||||||||| |||| ||||   ||||   |||||||||| ||||||| ||||||||    
T  11228788 ctagcaaacactaaaccttgataaaaaagaaacaagtttggaagcgacaaacttgtggaaatagggttctagaatccaccagaaaattgagaaaactct 11228690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 30217880 - 30217794
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattga 109  Q
    ||||||| ||||||||||||||| |||   |||||||| ||||||||||||| |||||||||  ||||| | |||||||||| ||||||    
T  30217880 ctagcaagcgctaaacctagattgaaag--aacaagttcgcaagcgacaaacttgtgaaaatagagttctgaaatccaccagtaattga 30217794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 859180 - 859239
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  859180 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 859239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 1217184 - 1217243
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  1217184 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 1217243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 13882710 - 13882769
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  13882710 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 13882769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 13886183 - 13886242
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  13886183 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 13886242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 3778760 - 3778823
Alignment:
Q  51 aacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaa 114  Q
    ||||||||||||||||| |||| |||||||||   |||||| ||||||||||||||||| ||||    
T  3778760 aacaagtttgcaagcgagaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 3778823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 1365738 - 1365641
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattga-aaaaactct 118  Q
    ||||||| |||||||||||||||  |||| |||||||||| ||||||  ||| |||||||||   ||||| |||||||||| ||||||| |||||||||    
T  1365738 ctagcaagcgctaaacctagatt-gaaaggaacaagtttgtaagcgatgaacttgtgaaaatagggttccataatccaccaaaaattgagaaaaactct 1365641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 1785621 - 1785675
Alignment:
Q  214 ataaattattaaaattaggctcaa-taataatactaaagaaaccatcctacatca 267  Q
    ||||||||||||||||||||| || ||||||||||||||||||| || |||||||    
T  1785621 ataaattattaaaattaggctgaaataataatactaaagaaaccctcatacatca 1785675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 4133296 - 4133394
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactcta 119  Q
    |||||||| ||||||| |||||| || |  ||||| ||| |||||||||||| |||||||||  ||||| | ||||| | ||||||||| |||||||||    
T  4133296 ctagcaaatgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttctgaaatcccctagaaattgagaaaactcta 4133394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 13466798 - 13466756
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaa 63  Q
    ||||||| ||||||||||| |||||||||||||||||||||||    
T  13466798 ctagcaagcgctaaacctatattaaaaagaaacaagtttgcaa 13466756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 7803064 - 7803133
Alignment:
Q  32 taaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccacca 101  Q
    ||||||||| |  ||||||||||||||||||||| |||||| | ||||||| | |||||| |||||||||    
T  7803064 taaacctaggtcgaaaagaaacaagtttgcaagcaacaaacttatgaaaataaggttccggaatccacca 7803133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 1786741 - 1786653
Alignment:
Q  30 gctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||||  ||||  |||||||||||||||||||||| || ||||||   |||||  |||||| |||||||||  ||||||||    
T  1786741 gctaaacctagatagaaaaataacaagtttgcaagcgacaaacatgcgaaaatagggttccagaatccatcagaaattgcgaaaactct 1786653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 35814938 - 35814841
Alignment:
Q  20 actagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||| ||||| ||||||| ||| ||| ||| |||||||||||||||| ||| ||||| | ||||   |||| |||| ||||||| ||||||||    
T  35814938 actagcaaacactaaatctagattgaaa-gaaccaactttgcaagcgacaaacttgtaaaaataaggttcttgaatctaccataaattgagaaaactct 35814841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 7e-24; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 23457713 - 23457616
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||   |||||| ||||||||| ||||||| ||||||||    
T  23457713 ctagcaagcgctaaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccaaaaattgagaaaactct 23457616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 23456631 - 23456545
Alignment:
Q  32 taaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||| ||| |||||||||||||||||||||||||||| | ||||||| |||||| | |||||||| |||| ||| ||||||||    
T  23456631 taaacctatattgaaaagaaacaagtttgcaagcgacaaacttttgaaaataaagttctggaatccaccggaaactgagaaaactct 23456545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 32161993 - 32162086
Alignment:
Q  23 agcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaact 116  Q
    ||||| || |||||||||||  |||||||||||||||||||| ||||||| |||||||||   |||| | ||||||||||||| ||| ||||||    
T  32161993 agcaagcgttaaacctagatcgaaaagaaacaagtttgcaagtgacaaacttgtgaaaatagggttcaggaatccaccagaaactgagaaaact 32162086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 33051685 - 33051588
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| ||||||||||| ||| ||||  |||||||||||||||||||||| | |||||||   |||| | ||||||| ||||||||| ||||||||    
T  33051685 ctagcaagcgctaaacctaaattgaaaaagaacaagtttgcaagcgacaaacttttgaaaatagggttctggaatccactagaaattgagaaaactct 33051588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 5171615 - 5171704
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| ||| |||||   ||||   ||||||| ||||||||| ||||||||    
T  5171615 cgctaaatctagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaatagggttcaagaatccactagaaattgagaaaactct 5171704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 8294615 - 8294546
Alignment:
Q  51 aacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactctaa 120  Q
    |||| ||||||||||||||||| ||| |||||   ||| | |||||||||||||||||||||||||||||    
T  8294615 aacacgtttgcaagcgacaaacttgtaaaaatagtgtttcataatccaccagaaattgaaaaaactctaa 8294546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 36647359 - 36647299
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||| |||||||||| |||| ||||||| |||||||||||||||||||| |||||||||    
T  36647359 ctagcaagcgctaaacctcgattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 36647299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 21772440 - 21772345
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||| |||||||||| |||||| |||| ||||||||||||||||||||||| | |||||||   |||||  |||||| || ||||||| ||||||||    
T  21772440 tagccaacgctaaacttagattgaaaa-aaacaagtttgcaagcgacaaacttatgaaaatagggttcctgaatccatcacaaattgagaaaactct 21772345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 27952342 - 27952401
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  27952342 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 27952401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 27956178 - 27956237
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||||||||| |||||||    
T  27956178 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacctatgaaaat 27956237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 31634169 - 31634110
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||||||||||||||||||  ||||||| ||||||||| |||||||||| |||||||||    
T  31634169 tagcaaacgctaaacctagatagaaaagaa-caagtttgctagcgacaaacttgtgaaaat 31634110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 12123941 - 12124011
Alignment:
Q  44 aaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaa 114  Q
    ||||| || ||||||||||||||||||||||||||||||   |||| | ||||||||| ||||||| ||||    
T  12123941 aaaaaaaatcaagtttgcaagcgacaaacctgtgaaaatatggttcaggaatccaccaaaaattgagaaaa 12124011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 4184979 - 4184898
Alignment:
Q  38 tagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattga-aaaaactct 118  Q
    |||||| |||||||| ||||| ||||||||||||| |||||||||   ||| || ||||||| ||||||||| |||||||||    
T  4184979 tagattcaaaagaaataagttcgcaagcgacaaacttgtgaaaatagggtttcggaatccacgagaaattgagaaaaactct 4184898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 15129456 - 15129396
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||| ||||||||||||||  ||||||| |||||| ||||||||||||| |||||||||    
T  15129456 ctagcaagcgctaaacctagatagaaaagaa-caagttcgcaagcgacaaacttgtgaaaat 15129396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 18946026 - 18945941
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaatt 107  Q
    |||||| |||||||| |||||| | |||||| || |||||||||||||||| ||||| ||   ||||||| ||| |||||||||||    
T  18946026 tagcaagcgctaaacgtagattgagaagaaataaatttgcaagcgacaaacttgtgagaacagagttccggaattcaccagaaatt 18945941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 2156032 - 2155973
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| ||||||||| |||||||||| |||||||||    
T  2156032 tagcaagcgctaaacctagatagaaaagaa-caagtttgcgagcgacaaacttgtgaaaat 2155973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 22011501 - 22011442
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||||||| ||||||| |||||||||    
T  22011501 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagtgacaaacttgtgaaaat 22011442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 29715216 - 29715168
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaa 70  Q
    |||||||| ||||||||||||| |||| ||| |||||||||||||||||    
T  29715216 tagcaaactctaaacctagattgaaaataaaaaagtttgcaagcgacaa 29715168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 31636402 - 31636343
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| | |||||||||||||||||| |||||||||    
T  31636402 tagcaagcgctaaacctagatagaaaagaa-ctagtttgcaagcgacaaacttgtgaaaat 31636343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 33655693 - 33655634
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  |||| | ||||||||||||||||||||| |||||||||    
T  33655693 tagcaagcgctaaacctagatagaaaa-atacaagtttgcaagcgacaaacttgtgaaaat 33655634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 32163804 - 32163854
Alignment:
Q  32 taaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||||||||| |||||||| ||||||| ||||| ||||| |||||||||    
T  32163804 taaacctagattgaaaagaaataagtttgtaagcgtcaaacttgtgaaaat 32163854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 36615243 - 36615178
Alignment:
Q  55 agtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaatt--gaaaaaactct 118  Q
    |||||||||||||||||  ||| ||||| | |||||| |||||||||||||||  |||||||||||    
T  36615243 agtttgcaagcgacaaaattgtaaaaataaggttccggaatccaccagaaattaagaaaaaactct 36615178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 28737972 - 28737912
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||||  |||||||||||||| ||||||  |||||||||||||||||||| | |||||||    
T  28737972 ctagcaagtgctaaacctagattgaaaagag-caagtttgcaagcgacaaacttttgaaaat 28737912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 10494958 - 10494873
Alignment:
Q  33 aaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||||||| ||||||||    
T  10494958 aaacctagatggaaaagaaacaagtttgcaagtgacaaacctgtgaaaatagagttccggaattcaccagaaattgagaaaactct 10494873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 13991401 - 13991498
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||||||||||| || |||||| | |||| | |||||||||||| |||| ||||||||    
T  13991401 ctagcaagcgctaaatctagattgaaaagaaacaagtttgcaagcgacaaacatgcgaaaataaggttctggaatccaccagaatttgagaaaactct 13991498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 15848469 - 15848375
Alignment:
Q  23 agcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||||||||| ||||||| |||||||||||| ||||||| ||||||  ||||||||   ||||||| ||||||||| ||||||| ||||||||    
T  15848469 agcaaacgctaaatctagattgaaaagaaacaag-ttgcaagtgacaaaattgtgaaaagagagttccgaaatccaccaaaaattgagaaaactct 15848375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 7634136 - 7634050
Alignment:
Q  32 taaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||| ||||| ||||||||||||| ||| |||| |||| ||||  ||||| | ||||||||||||||||| ||||||||    
T  7634136 taaacctagattgaaaaggaacaagtttgcaaacgataaacttgtggaaatagagttctggaatccaccagaaattgagaaaactct 7634050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 18689551 - 18689641
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactcta 119  Q
    ||||||||||||||| |||||||| ||||||||| ||||||||| ||| |||||   ||| |  ||||||||||||||||| |||||||||    
T  18689551 cgctaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaatagggttgcagaatccaccagaaattgagaaaactcta 18689641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 54700619 - 54700676
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtga 78  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||    
T  54700619 ctagcaaacgctaaacctatattgaaaagaaacaagtttgcaagtgacaaacttgtga 54700676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 7724099 - 7724193
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||  |||||||||| ||| ||||||| ||||||||| ||||||||||   |||||||   |||||| ||||||||||||||||| ||||||||    
T  7724099 ctagcaagtgctaaacctatattgaaaagaagcaagtttgcgagcgacaaac---tgaaaatagggttccggaatccaccagaaattgagaaaactct 7724193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 17254905 - 17255003
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactcta 119  Q
    |||||||||||||||| |||||| || |  ||||| ||| |||||||||||| |||||||||  ||||| | ||||| | ||||||||| |||||||||    
T  17254905 ctagcaaacgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttctgaaatcccctagaaattgagaaaactcta 17255003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 22486798 - 22486893
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| ||||||||||| ||  ||||  | |||||||||||||||||| | ||||||||| | |||||| ||||||||||||||||| ||||||||    
T  22486798 ctagcaagcgctaaacctatatagaaaaagaccaagtttgcaagcgacaa-cttgtgaaaat-aggttccggaatccaccagaaattgagaaaactct 22486893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 38888016 - 38888073
Alignment:
Q  25 caaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| |||||||||||| |||| |||||| |||||||||||||||| |||||||||    
T  38888016 caaacgttaaacctagattgaaaataaacaaatttgcaagcgacaaacttgtgaaaat 38888073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 50515907 - 50515978
Alignment:
Q  11 gaagcagagactagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||| ||| ||||||| ||||| || |||| | | |||||||||||||||||||||||||| |||||||||    
T  50515907 gaagcggaggctagcaagcgctacacttagactgagaagaaacaagtttgcaagcgacaaacttgtgaaaat 50515978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 53477235 - 53477333
Alignment:
Q  22 tagcaaacgctaaacctagattaa--aaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||||||||||||  |  ||| |||||||||| |||||| |||||||||||||||   |||    ||||||||||||||||| ||||||||    
T  53477235 tagcaaacgctaaacctagatagagtaaaaaaacaagtttacaagcgtcaaacctgtgaaaatggggttttagaatccaccagaaattgagaaaactct 53477333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 3675161 - 3675081
Alignment:
Q  38 tagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||| ||||||||||||||||||| ||| ||| |  ||||| | ||||| || ||||||||||||||| | ||||||||    
T  3675161 tagattgaaaagaaacaagtttgcaaacgataaatccatgaaattaaagtttcggaatccaccagaaattaagaaaactct 3675081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 6659354 - 6659413
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||| ||||||  ||||||| |||||||||||||||||||| |||||||||    
T  6659354 tagcaagcgctaaatctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 6659413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 13990728 - 13990796
Alignment:
Q  50 aaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||||||  |||||| |||||||||   |||| | |||||| |||||||||||||||||||    
T  13990728 aaacaagtttgcaagtaacaaacttgtgaaaatagggttctggaatccatcagaaattgaaaaaactct 13990796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 18657074 - 18657162
Alignment:
Q  31 ctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactcta 119  Q
    ||||||||||||| |||||||| ||||||||| ||||||||| ||| |||||    || |  |||||||| |||||||| |||||||||    
T  18657074 ctaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaataggatttcagaatccaccggaaattgagaaaactcta 18657162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 26974834 - 26974896
Alignment:
Q  167 actaaggaaaccctaatgaaccgaaaaactagaacagaaaatacaacataaattattaaaatt 229  Q
    ||||||||||| |||||||||  |||||| | || |||||||| |||| ||||||||||||||    
T  26974834 actaaggaaactctaatgaactaaaaaaccaaaatagaaaataaaacaaaaattattaaaatt 26974896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 7723686 - 7723745
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||||| |||||| |||||||||    
T  7723686 ctagcaagcgctaaac-tagattgaaaagaa-caagtttgcaagctacaaacttgtgaaaat 7723745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 9260622 - 9260545
Alignment:
Q  39 agattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaact 116  Q
    ||||| || |||||||||||||||| |||||||| || ||||||   ||| |  ||||||||||||||||| ||||||    
T  9260622 agatttaagagaaacaagtttgcaaacgacaaacttgcgaaaatagggtttcagaatccaccagaaattgagaaaact 9260545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 40206215 - 40206123
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaa 114  Q
    ||||||| ||||||| ||| ||| ||| || ||||||| ||||||||||||| |||||||||   ||| || ||| ||||||||||||| ||||    
T  40206215 ctagcaagcgctaaatctaaattgaaa-gagacaagttcgcaagcgacaaacttgtgaaaatagtgtttcggaattcaccagaaattgagaaaa 40206123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 53477384 - 53477453
Alignment:
Q  160 tttaaacactaaggaaaccctaatgaaccgaaaaactagaacagaaaatacaacataaattattaaaatt 229  Q
    |||||| | ||||||||| |||||| |||||||| | | |||| |||||| |||| ||||||||||||||    
T  53477384 tttaaatattaaggaaactctaatggaccgaaaatccaaaacataaaataaaacagaaattattaaaatt 53477453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 28660769 - 28660852
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaa 105  Q
    |||||||||||||||||||||  | |||||||||||||||||||||||||| |||||||||   |||||| |||||||||||||    
T  28660769 tagcaaacgctaaacctagatagataagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccgaaatccaccagaaa 28660852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 10927259 - 10927164
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||||||||||||||||| | ||||  |||||||||||||||||||||| ||||||||    |||||| ||||||||||||||||| ||||||||    
T  10927259 ctagcaaacgctaaacctagactgaaaaagaacaagtttgcaagcgacaaacttgtgaaaa--gggttccggaatccaccagaaattgagaaaactct 10927164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 12944183 - 12944086
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||| |||||||| ||| |||||   |||| | ||||||||||||||||| ||||||||    
T  12944183 ctagcaagcgctaaatctagattgaaaagaaacaagtttgcaaacgacaaacttgtaaaaatagggttctggaatccaccagaaattgagaaaactct 12944086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 31915592 - 31915519
Alignment:
Q  46 aaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattga-aaaaactct 118  Q
    ||||||||||||||||||||||||||| |||||||||   |||||| ||||||||||||||||| |||||||||    
T  31915592 aaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactct 31915519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 50713772 - 50713683
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||||||||||| |||||| ||||||| ||| ||||||||| |||||||||   ||| || ||||||||||||||||| ||||||||    
T  50713772 cgctaaacctagattgaaaagagacaagttcgcaggcgacaaacttgtgaaaatagggtttcggaatccaccagaaattgagaaaactct 50713683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 10928356 - 10928259
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||  ||||||||||||||||||||| | ||||||| ||| ||||||| ||||||||| | ||| || ||||||| | ||||||| ||||||||    
T  10928356 ctagcaagtgctaaacctagattaaaaagatataagtttgtaagtgacaaacttgtgaaaataaggtttcggaatccactataaattgagaaaactct 10928259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 31913454 - 31913359
Alignment:
Q  10 agaagcagagactagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaat 106  Q
    ||||||| || ||||||| |||||||||||| || ||| |||||||||||||||||||||||| ||| |||||    ||||| ||||||||||||||    
T  31913454 agaagcataggctagcaagcgctaaacctaggttgaaa-gaaacaagtttgcaagcgacaaacttgtaaaaataggtttccgaaatccaccagaaat 31913359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 43681529 - 43681433
Alignment:
Q  21 ctagcaaacgctaaacctagatt-aaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaact 116  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||  |||||||||  || |||  |||| |||||||||| | ||||||    
T  43681529 ctagcaagcgctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaatttgtgaaaatagagatccagaatctaccagaaattaagaaaact 43681433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 33152756 - 33152841
Alignment:
Q  36 cctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaatt--gaaaaaactcta 119  Q
    |||||||| |||||||||||||||||||||||||||| |  || |||   |||||| |||||||||||||||  ||||||||||||    
T  33152756 cctagattgaaaagaaacaagtttgcaagcgacaaacttacgacaatagggttccggaatccaccagaaattaagaaaaaactcta 33152841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 8221546 - 8221458
Alignment:
Q  30 gctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||| ||||| || ||| |||||||||||| |||||||| | |||||||   |||| | ||||||||||||||||| ||||||||    
T  8221546 gctaaaccaagattgaatagagacaagtttgcaaacgacaaacttatgaaaatagggttctggaatccaccagaaattgagaaaactct 8221458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 8931285 - 8931226
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||| |||| |||||||||    
T  8931285 tagcaagcgctaaacctagattgaaaa-aaacaagtttgcaagcgataaacttgtgaaaat 8931226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 9194970 - 9195061
Alignment:
Q  26 aaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||| |||||||||||| ||  |||||||||||||||||||||||| ||||  |||   ||||  |||||||||| ||||||||||||||||    
T  9194970 aaacgttaaacctagattgaat-gaaacaagtttgcaagcgacaaacatgtgttaatagggttcaataatccaccaaaaattgaaaaaactct 9195061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 10925814 - 10925710
Alignment:
Q  11 gaagcagagactagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaa 110  Q
    ||||| ||| ||||||| ||||||||||| ||| ||||   |||| |||||||||||||||| ||| |||||   |||| | ||||||||  ||||||||    
T  10925814 gaagcggaggctagcaagcgctaaacctaaattgaaaa---acaattttgcaagcgacaaacttgtaaaaatatggttctggaatccaccgaaaattgaa 10925718  T
Q  111 aaaactct 118  Q
    ||||||||    
T  10925717 aaaactct 10925710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 28661090 - 28661151
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||||  |||||||||| ||| | ||||||||||||||||||||| |||||||| |||||    
T  28661090 ctagcaagtgctaaacctaaattgataagaaacaagtttgcaagcgaaaaacctgtaaaaat 28661151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 13444021 - 13444071
Alignment:
Q  31 ctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  13444021 ctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 13444071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 8968031 - 8968081
Alignment:
Q  216 aaattattaaaattaggctcaa-taataatactaaagaaaccatcctacat 265  Q
    |||||||||||||| |||| || ||||||||||||||||||| ||||||||    
T  8968031 aaattattaaaattgggctgaaataataatactaaagaaaccctcctacat 8968081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 24731294 - 24731197
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||||| |||||| |||||||||  |||| || ||| || |||||||||| ||||||||    
T  24731294 ctagcaagcgctaaacctagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatagagtttcggaattcatcagaaattgagaaaactct 24731197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 25479427 - 25479524
Alignment:
Q  22 tagcaaacgctaaacctagattaaaa-agaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||| |||||| || ||||||| | |||||| |||||||||||| |||| ||||||||    
T  25479427 tagcaaacgctaaacctaggttaaaaaagaaacaaggttgcaagtgacaaatctttgaaaataaggttccggaatccaccagaatttgagaaaactct 25479524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 20693855 - 20693769
Alignment:
Q  32 taaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||| |||| ||||||||||||||||||||||  |||||||||   |||||| |||||| |||||||||| ||||||||    
T  20693855 taaacctagattgaaaataaacaagtttgcaagcgacaaatttgtgaaaatatggttccggaatccatcagaaattgagaaaactct 20693769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 14130221 - 14130135
Alignment:
Q  32 taaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||| ||||||  |||||| |||||||||||||||| |||  ||||||||| | |||||| ||||||||||||||||| ||||||||    
T  14130221 taaatctagatcgaaaagagacaagtttgcaagcgataaatttgtgaaaataaggttccggaatccaccagaaattgagaaaactct 14130135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 16598315 - 16598218
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccag-aaattgaaaaaactct 118  Q
    |||||| |||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||   |||||  ||| |||||| ||||||| ||||||||    
T  16598315 tagcaagcgctaaacttagattagaaagaaacaagtttgcacgcgacaaacttgtgaaaatagggttccaaaatacaccagtaaattgagaaaactct 16598218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 2687812 - 2687712
Alignment:
Q  18 agactagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactc 117  Q
    |||||||| | ||||||||||||||  ||||  |||||||||||||||||||||| |||||||||   ||||   ||||||| ||||||||| |||||||    
T  2687812 agactagcgagcgctaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttctagaatccacaagaaattgagaaaactc 2687713  T
Q  118 t 118  Q
    |    
T  2687712 t 2687712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 2689195 - 2689117
Alignment:
Q  39 agattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||   ||||||  ||||| |||||||||| ||||||||    
T  2689195 agattgaaaagaaacaagtttgcaagcgacaaaactgtgaaaatagggttccggcatcca-cagaaattgagaaaactct 2689117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 18468714 - 18468628
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattga 109  Q
    |||||| |||||||||||| |  ||||||| |||| ||||||||||||||| |||||||||   |||||| |||||||||||||||||    
T  18468714 tagcaagcgctaaacctaggtagaaaagaa-caagcttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattga 18468628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 2189744 - 2189844
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaatt--gaaaaaactct 118  Q
    ||||||| |||||||||| |||| ||||||| |||||||||||||||||||| ||||||||| | |||  | ||||||||| ||| |  |||||||||||    
T  2189744 ctagcaagcgctaaacctcgattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaataaggttttggaatccaccaaaaaatgagaaaaaactct 2189842  T
Q  119 aa 120  Q
    ||    
T  2189843 aa 2189844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 24577554 - 24577647
Alignment:
Q  25 caaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||| ||||| || ||| || ||| ||||||||||||  ||||||| |||||||||   ||| |||||||||||||||||||| ||||||||    
T  24577554 caaacgataaacttatattgaagagagacaagtttgcaaatgacaaacatgtgaaaatggggtttcgtaatccaccagaaattgagaaaactct 24577647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 24578807 - 24578896
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||||||||||  ||||||||||||||||||||||  ||| ||||||||||   |||| | ||||||| ||||||||  ||||||||    
T  24578807 cgctaaacctagatcgaaaagaaacaagtttgcaagcggtaaatctgtgaaaatagggttctggaatccactagaaattgtgaaaactct 24578896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 42890458 - 42890398
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||| ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  42890458 ctagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 42890398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 42891687 - 42891747
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||| ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  42891687 ctagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 42891747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 23570649 - 23570590
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  23570649 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 23570590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 22926679 - 22926731
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  22926679 cgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 22926731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 24731099 - 24731038
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||| |||||||  |||||| ||||| ||||||||||||||| |||||| |||||||||    
T  24731099 ctagcaagcgctaaatttagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaat 24731038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 26374966 - 26374870
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| || ||| |||||||| ||||||| |||||| ||||||||||||| ||| |||||   ||| || ||||||||||||||| | ||||||||    
T  26374966 ctagcaagcgttaagcctagattgaaaagaa-caagttcgcaagcgacaaacttgtaaaaatagggtttcgaaatccaccagaaattaagaaaactct 26374870  T

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Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 22512070 - 22512129
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| |||||||||||| |  ||||||| |||||||||||||||||||| |||||||||    
T  22512070 tagcaagcgctaaacctaggtagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 22512129  T

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Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 22519370 - 22519429
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| |||||||||||| |  ||||||| |||||||||||||||||||| |||||||||    
T  22519370 tagcaagcgctaaacctaggtagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 22519429  T

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Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 22921874 - 22921933
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  |||||||  ||||||||||||||||||| |||||||||    
T  22921874 tagcaagcgctaaacctagatagaaaagaat-aagtttgcaagcgacaaacttgtgaaaat 22921933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 2689026 - 2688971
Alignment:
Q  211 aacataaattattaaaattaggctcaa-taataatactaaagaaaccatcctacat 265  Q
    |||| ||||||||||||||||||| || ||| ||||||||||||||| ||||||||    
T  2689026 aacagaaattattaaaattaggctgaaataaaaatactaaagaaaccctcctacat 2688971  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 2472711 - 2472803
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaa 114  Q
    ||||||| ||||||||||| ||| ||| || |||||||||||| |||||||| |||||||||   |||||| ||||||||||||||||| ||||    
T  2472711 ctagcaagcgctaaacctaaattgaaa-gagacaagtttgcaaccgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 2472803  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 43303984 - 43304043
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  43303984 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 43304043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 5128967 - 5128915
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  5128967 cgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 5128915  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 2107901 - 2107972
Alignment:
Q  46 aaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||||| |||||||||| |||||| ||| ||||| | |||||| ||||||||||| ||||| ||||||||    
T  2107901 aaagaaacaggtttgcaagcaacaaacttgtaaaaataaggttccg-aatccaccagagattgagaaaactct 2107972  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 43306696 - 43306755
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||||||||||||||  ||||||| ||||||||||||| |||||| |||||||||    
T  43306696 tagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcaacaaacttgtgaaaat 43306755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 45168351 - 45168401
Alignment:
Q  30 gctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaa 81  Q
    |||||||||||||| |||  ||||||||||||||||||||||| ||||||||    
T  45168351 gctaaacctagattgaaat-aaacaagtttgcaagcgacaaacttgtgaaaa 45168401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 33175902 - 33175841
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||||||| |||||||| ||| |||||| ||||||||||||  ||||||| | |||||||    
T  33175902 ctagcaaacgataaacctatattgaaaagagacaagtttgcaaaggacaaacttatgaaaat 33175841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 46758 - 46844
Alignment:
Q  23 agcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaa-gttccgtaatccaccagaaattga 109  Q
    ||||| ||||||||||||||  ||||||| |||||||||||||||||||||| | ||||| || |||||| ||||||||| |||||||    
T  46758 agcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacctatcaaaattaaggttccggaatccaccaaaaattga 46844  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 18252453 - 18252386
Alignment:
Q  51 aacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||||||||||||||||||||||||||||   ||||  |||||||| ||||||||| ||||||||    
T  18252453 aacaagtttgcaagcgacaaacctgtgaaaatagggttctataatccactagaaattgagaaaactct 18252386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 492634 - 492576
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaa 79  Q
    ||||||| |||||||  |||||| |||||||||||||||||||||||||||| ||||||    
T  492634 ctagcaagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaacttgtgaa 492576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 8456402 - 8456483
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccaga 103  Q
    |||||| ||||||||||||||| |||||||||||||| ||||||||| ||| ||| |||||    ||||| |||||||||||    
T  8456402 tagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacgaacttgtaaaaataggattccgaaatccaccaga 8456483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 26140409 - 26140313
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    |||||||||||||| ||||||| |||  ||||||| ||||||||||||||| | |||||||   ||||   ||||||||| ||||||| ||||||||    
T  26140409 tagcaaacgctaaatctagattgaaagaaaacaagattgcaagcgacaaacttatgaaaatagggttcaagaatccaccaaaaattgagaaaactct 26140313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 19497327 - 19497419
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaa 114  Q
    |||||| |||||||  ||||  |||||  |||||||||||||||||||||| |||||||||   |||||| |||||| || ||||||| ||||    
T  19497327 tagcaagcgctaaatgtagaaaaaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttccgaaatccatcaaaaattgagaaaa 19497419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 21848989 - 21849048
Alignment:
Q  22 tagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    |||||| ||| ||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  21848989 tagcaagcgccaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 21849048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 40778817 - 40778869
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||||||||||  ||||||| |||||||||||||||||||| ||| |||||    
T  40778817 cgctaaacctagatagaaaagaa-caagtttgcaagcgacaaacttgtaaaaat 40778869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 9770 - 9672
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacc--tgtgaaaatcaagttccgtaatccaccagaaattgaaaaaactct 118  Q
    ||||||| || |||||||||||| ||||||| ||||||| |||||||| |||   |||||||||   |||||| ||||||||||||||||| ||||||||    
T  9770 ctagcaagcggtaaacctagattgaaaagaa-caagtttccaagcgactaacacttgtgaaaatagggttccgaaatccaccagaaattgagaaaactct 9672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 37769 - 37693
Alignment:
Q  29 cgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaatt 107  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| | ||||||| | |||||  |||| ||||||||||    
T  37769 cgctaaacctagattgaaaagaa-caagtttgcaagcgacaaacttatgaaaat-aggttccaaaatcgaccagaaatt 37693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 1724 - 1632
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattgaaaaaa 114  Q
    ||||||| || |||||||||||| ||| ||||||||||||||| |||||||| ||| |||||   |||| | |||||||||||| |||| ||||    
T  1724 ctagcaagcgttaaacctagattgaaa-gaaacaagtttgcaaacgacaaacttgtcaaaatatggttctggaatccaccagaatttgagaaaa 1632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 145801 - 145752
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaa 70  Q
    ||||||| ||||||||||||||| |||| || ||||||||||||||||||    
T  145801 ctagcaatcgctaaacctagattgaaaaaaatcaagtttgcaagcgacaa 145752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 11626 - 11671
Alignment:
Q  36 cctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||||||    
T  11626 cctagattaaaaagaaa-aagtttgcaagtgacaaacttgtgaaaat 11671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 17706 - 17646
Alignment:
Q  21 ctagcaaacgctaaacctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 82  Q
    ||||||| || |||||||||||| ||| ||||||||||||||| |||||||| ||| |||||    
T  17706 ctagcaagcgttaaacctagattgaaa-gaaacaagtttgcaaacgacaaacttgtcaaaat 17646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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