View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_low_42 (Length: 407)

Name: NF8991_low_42
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_low_42
NF8991_low_42
[»] chr4 (1 HSPs)
chr4 (17-391)||(31160117-31160491)
[»] chr8 (1 HSPs)
chr8 (17-71)||(32229983-32230037)
[»] chr5 (1 HSPs)
chr5 (31-66)||(10813145-10813180)
[»] chr3 (1 HSPs)
chr3 (31-66)||(54548327-54548362)
[»] scaffold0996 (1 HSPs)
scaffold0996 (21-63)||(1538-1580)
[»] chr1 (1 HSPs)
chr1 (21-63)||(33978172-33978214)
[»] chr6 (3 HSPs)
chr6 (29-66)||(14453398-14453435)
chr6 (343-379)||(12781605-12781641)
chr6 (343-379)||(12785795-12785831)


Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 31160491 - 31160117
Alignment:
Q  17 acatcattaagaatatggtggctaggatgagataaggaagctctagctattgtgttcaattttattaaaaaataaatttgtgtagatatattatagttta 116  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31160491 acatcattaagaatatggtggctaggatgagataaggaagttttagctattgtgttcaattttattaaaaaattaatttgtgtagatatattatagttta 31160392  T
Q  117 ttttggctgtccatccgaatattttggatgtttttatatttggtccttcccttgtcacactattcatcgactgcttcttttatattccattgtctcctca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31160391 ttttggctgtccatccgaatattttggatgtttttatatttggtccttcccttgtcacactattcatcgactgcttcttttatattccattgtctcctca 31160292  T
Q  217 ttaatagatagatctcctcggtaatccattcatcaactaattatttgtgattgaaagcatatacatggcctgcagtatcatccaaagaagcaccagttcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31160291 ttaatagatagatctcctcggtaatccattcatcaactaattatttgtgattgaaagcatatacatggcctgcagtatcatccaaagaagcaccagttcc 31160192  T
Q  317 tctcttcttcggctatgatgatcaagtatgacgtttttgtgagctttagaggccaagacacacacaacaattttg 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31160191 tctcttcttcggctatgatgatcaagtatgacgtttttgtgagctttagaggccaagacacacacaacaattttg 31160117  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 32229983 - 32230037
Alignment:
Q  17 acatcattaagaatatggtggctaggatgagataaggaagctctagctattgtgt 71  Q
    |||||||||| ||||||  ||||||| ||||||||||||||||||||||| ||||    
T  32229983 acatcattaaaaatatgaaggctagggtgagataaggaagctctagctatagtgt 32230037  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 10813145 - 10813180
Alignment:
Q  31 atggtggctaggatgagataaggaagctctagctat 66  Q
    |||| |||||||||||||||||||||||||||||||    
T  10813145 atgggggctaggatgagataaggaagctctagctat 10813180  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 54548327 - 54548362
Alignment:
Q  31 atggtggctaggatgagataaggaagctctagctat 66  Q
    |||| |||||||||||||||||||||||||||||||    
T  54548327 atgggggctaggatgagataaggaagctctagctat 54548362  T

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Target: scaffold0996 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 1538 - 1580
Alignment:
Q  21 cattaagaatatggtggctaggatgagataaggaagctctagc 63  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||    
T  1538 cattaaaaatatgggggctaggatgacataaggaagctctagc 1580  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 33978172 - 33978214
Alignment:
Q  21 cattaagaatatggtggctaggatgagataaggaagctctagc 63  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||    
T  33978172 cattaaaaatatgggggctaggatgacataaggaagctctagc 33978214  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 14453398 - 14453435
Alignment:
Q  29 atatggtggctaggatgagataaggaagctctagctat 66  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  14453398 atatgggggctaggatgagataaggatgctctagctat 14453435  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 12781641 - 12781605
Alignment:
Q  343 tatgacgtttttgtgagctttagaggccaagacacac 379  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  12781641 tatgacgtgtttgtgagctttagaggcccagacacac 12781605  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 12785831 - 12785795
Alignment:
Q  343 tatgacgtttttgtgagctttagaggccaagacacac 379  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  12785831 tatgacgtgtttgtgagctttagaggcccagacacac 12785795  T

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