View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_low_47 (Length: 354)

Name: NF8991_low_47
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_low_47
NF8991_low_47
[»] chr6 (4 HSPs)
chr6 (35-327)||(228887-229171)
chr6 (60-294)||(237770-238000)
chr6 (217-303)||(24098388-24098474)
chr6 (234-303)||(32243325-32243394)
[»] chr4 (1 HSPs)
chr4 (201-303)||(50174530-50174634)
[»] chr5 (2 HSPs)
chr5 (210-303)||(13557286-13557379)
chr5 (210-303)||(13510400-13510493)
[»] chr1 (2 HSPs)
chr1 (217-301)||(43317289-43317373)
chr1 (255-303)||(33766892-33766940)
[»] chr2 (2 HSPs)
chr2 (219-303)||(42141796-42141880)
chr2 (215-243)||(16450045-16450073)
[»] chr8 (3 HSPs)
chr8 (210-301)||(27116721-27116812)
chr8 (217-303)||(12511081-12511167)
chr8 (217-301)||(9203595-9203677)
[»] chr7 (3 HSPs)
chr7 (210-303)||(22188628-22188719)
chr7 (210-295)||(2344805-2344890)
chr7 (217-298)||(5104833-5104914)
[»] chr3 (1 HSPs)
chr3 (217-297)||(4561794-4561874)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 35 - 327
Target Start/End: Original strand, 228887 - 229171
Alignment:
Q  35 ggactattcaattgcctattgagaggttcttctctcaactagtgtgtgtgcacgtccatttggtcatatacccttatttgtaatgcaaaggaagagaggg 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |             
T  228887 ggactattcaattgcctattgagaggttcttctctcaactagtgtgtgagcacgtccatttggtcatatacccttatttgtaatgcaaaagcc------- 228979  T
Q  135 tcaactctcatactctaa--ctctaacaacaatcttcctcccatactcttatttttaatgctccctcggtcccaaattatgatattttgatcatttcata 232  Q
        ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  228980 ----ctctcatactctaagtctctaacaacaatcttcctcccatactcttatttttaatgctccctcggtcctaaattatgatgttttgatcatttcata 229075  T
Q  233 taaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattt-taaaaaattatccttcaattgtcacaacatttctttaatat 327  Q
     |||||||||| | ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  229076 caaattaagaactgtaattaatgtcgtatgaaaaagagaaattacaagtcatttataaaaaattatccttcaattgtcacaacatttctttaatat 229171  T

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Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 60 - 294
Target Start/End: Complemental strand, 238000 - 237770
Alignment:
Q  60 gttcttctctcaactagtgtgtgtgcacgtccatttggtcatatacccttatttgtaatgcaaaggaagagagggtcaactctcatactctaa--ctcta 157  Q
    ||||||||||| ||||||||||||      ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||  |||||    
T  238000 gttcttctctctactagtgtgtgt------ccatttggtcatataccattatttgtaacacaaagtaagagagggtcaactctcatactctaagtctcta 237907  T
Q  158 acaacaatcttcctcccatactcttatttttaatgctccctcggtcccaaattatgatattttgatcatttcatataaattaagaagtataattaacgtc 257  Q
    || |||||||| ||| |||||||||| |||||||||| ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||    
T  237906 acgacaatctttctctcatactcttaattttaatgcttcctcgatcccaaattatgatgttttgatcattgcatataaactaagaagtataattaatgtc 237807  T
Q  258 gtatgataaagagaaattacaagtcattttaaaaaat 294  Q
    ||||   |||||||||||| ||||| ||||| |||||    
T  237806 gtatccgaaagagaaattataagtcgttttagaaaat 237770  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 24098474 - 24098388
Alignment:
Q  217 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 303  Q
    |||||||||||||| || ||||||||| | ||||||| || || ||| ||| ||||||||||| | |||||| ||||||||| ||||    
T  24098474 ttttgatcatttcacatcaattaagaaatgtaattaatgttgtgtgagaaaaagaaattacaaataattttacaaaattatctttca 24098388  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 32243394 - 32243325
Alignment:
Q  234 aaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 303  Q
    ||||||| || | ||||||| || |||||| |||||||||||| || | |||||| ||||||||||||||    
T  32243394 aaattaaaaaatgtaattaatgttgtatgaaaaagagaaattataaataattttacaaaattatccttca 32243325  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 50174634 - 50174530
Alignment:
Q  201 gtcccaaattat--gatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatc 298  Q
    ||||||||||||  || ||||||||||||||| | |||||||||||| ||||||| || | |||  |||||||||||| ||||||||||| |||||||||    
T  50174634 gtcccaaattatacgacattttgatcatttcacacaaattaagaagtgtaattaatgttgcatgggaaagagaaattataagtcattttacaaaattatc 50174535  T
Q  299 cttca 303  Q
    |||||    
T  50174534 cttca 50174530  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 303
Target Start/End: Original strand, 13557286 - 13557379
Alignment:
Q  210 tatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 303  Q
    |||||||||||| |||||||| | |||||||||||| |||||||  | |||||| || | ||||||| | ||||||||| ||||||||||||||    
T  13557286 tatgatattttgttcatttcacacaaattaagaagtgtaattaatattgtatgagaacgtgaaattataggtcattttacaaaattatccttca 13557379  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 303
Target Start/End: Original strand, 13510400 - 13510493
Alignment:
Q  210 tatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 303  Q
    |||||||||||| |||||||| | |||||||||| | |||||||  | |||||  || | ||||||| | ||||||||| ||||||||||||||    
T  13510400 tatgatattttgttcatttcacacaaattaagaaatgtaattaatattgtatgggaacgtgaaattataggtcattttacaaaattatccttca 13510493  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 43317373 - 43317289
Alignment:
Q  217 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatcctt 301  Q
    ||||||||||||||||||||||||||||| ||| ||| || ||| || ||| ||| |||| |||| |||||| ||||||||||||    
T  43317373 ttttgatcatttcatataaattaagaagtgtaaataatgttgtaggaaaaacagagattataagtaattttacaaaattatcctt 43317289  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 33766892 - 33766940
Alignment:
Q  255 gtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 303  Q
    |||| |||| ||||| |||||| ||||||||||| ||||||||||||||    
T  33766892 gtcgcatgaaaaagaaaaattataagtcattttataaaattatccttca 33766940  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 42141796 - 42141880
Alignment:
Q  219 ttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 303  Q
    |||||||||| | | |||||||||||| |||||||  | |||||  ||||| |||||| ||||||||||| ||||||||||||||    
T  42141796 ttgatcattttacacaaattaagaagtgtaattaatattgtatggaaaagataaattataagtcattttacaaaattatccttca 42141880  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 16450073 - 16450045
Alignment:
Q  215 tattttgatcatttcatataaattaagaa 243  Q
    |||||||||||||||||||||||||||||    
T  16450073 tattttgatcatttcatataaattaagaa 16450045  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 27116812 - 27116721
Alignment:
Q  210 tatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatcctt 301  Q
    |||||||||| |||||||||| | |||||||||| | ||||||| || |||||  ||||| |||||| |||| |||| | ||||||||||||    
T  27116812 tatgatatttcgatcatttcacacaaattaagaaatgtaattaatgttgtatggaaaagataaattataagtaatttaacaaaattatcctt 27116721  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 12511081 - 12511167
Alignment:
Q  217 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 303  Q
    |||| ||||||||| |||| |||||||||  |||||| ||   |||  ||||||| |||| ||||||||||| ||||||||||||||    
T  12511081 ttttaatcatttcacataacttaagaagtgcaattaatgttaaatggaaaagagatattataagtcattttacaaaattatccttca 12511167  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 9203677 - 9203595
Alignment:
Q  217 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatcctt 301  Q
    ||||| |||||||| |||||||||||| ||||||  | || | |||| ||||||| |||| |||| |||||| ||||||||||||    
T  9203677 ttttggtcatttcacataaattaagaaatataat--atgttgcatgagaaagagagattataagtaattttacaaaattatcctt 9203595  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 22188719 - 22188628
Alignment:
Q  210 tatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatccttca 303  Q
    |||| |||||||||||||||||| |||| ||||| | |||||||  | ||| || |  ||||||||| ||||||||||| ||||||||||||||    
T  22188719 tatggtattttgatcatttcatacaaatcaagaaatctaattaatattgtacgaga--gagaaattataagtcattttataaaattatccttca 22188628  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 2344805 - 2344890
Alignment:
Q  210 tatgatattttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaatt 295  Q
    |||||| |||||||||||| | | |||||||||||| ||| ||| || |||||| |||||||||||| ||||  ||||| ||||||    
T  2344805 tatgatgttttgatcattttacacaaattaagaagtgtaaataatgttgtatgaaaaagagaaattataagtagttttacaaaatt 2344890  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 5104833 - 5104914
Alignment:
Q  217 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattatc 298  Q
    |||||||| ||||| | ||||||  || ||||| ||| || |||||| ||||| |||||| ||||||||||| |||||||||    
T  5104833 ttttgatcttttcacacaaattagaaaatataactaatgttgtatgagaaagataaattataagtcattttacaaaattatc 5104914  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 4561874 - 4561794
Alignment:
Q  217 ttttgatcatttcatataaattaagaagtataattaacgtcgtatgataaagagaaattacaagtcattttaaaaaattat 297  Q
    ||||| |||||||||||||| |||||| | ||||||| || |||||  |||||||||||| |||| | |||| ||||||||    
T  4561874 ttttggtcatttcatataaaataagaaatgtaattaatgttgtatggaaaagagaaattataagtaaatttacaaaattat 4561794  T

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