View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_48 (Length: 346)
Name: NF8991_low_48
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 147 - 328
Target Start/End: Original strand, 23705549 - 23705722
Alignment:
| Q |
147 |
ttttgcttgagttattacctatatttcaaaattcgtagtcattaaacaaccagaacaattacctgaatgagcctgaaaagaggtaaggcttaacaaacca |
246 |
Q |
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| T |
23705549 |
ttttgcttgagttattacctatatttaaaaattcgtagtcactaaacaaccagaacaattacctgattgagcctgaaaagaggtaaggcttaacaaacca |
23705648 |
T |
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| Q |
247 |
tcacctcaacaattaccgaaacacggcggcattgtaaatttgtaacagaaacggctagttcgccggagaaggcaaaccacaa |
328 |
Q |
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| T |
23705649 |
tcacctcaacaattaccgaaacacggtggca--------ttgtaacagaaacggctagttcgccggagaaggcaaaccacaa |
23705722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 23653310 - 23653181
Alignment:
| Q |
133 |
agacgaatttgttgttttgcttgagttattacctatatttcaaaattcgtagtc--at-taaacaaccagaacaattacctgaatgagcctgaaaagagg |
229 |
Q |
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|||||| |||| |||||| ||||||||||||||||| || ||||||||||||| || ||||| |||||||||||||||||| ||||||||||||| || |
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| T |
23653310 |
agacgagtttgatgttttacttgagttattacctatgctttaaaattcgtagtctgatataaactaccagaacaattacctgattgagcctgaaaagggg |
23653211 |
T |
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| Q |
230 |
taaggcttaacaaaccatcacctcaacaat |
259 |
Q |
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| T |
23653210 |
taaggcttaacaaaccatcaccacaacaat |
23653181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 23622223 - 23622153
Alignment:
| Q |
189 |
taaacaaccagaacaattacctgaatgagcctgaaaagaggtaaggcttaacaaaccatcacctcaacaat |
259 |
Q |
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| T |
23622223 |
taaacaaccagaacaattaccagattgagcctgaaaaggggtaaggcttaacaaaccatcaccacaacaat |
23622153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 23705475 - 23705548
Alignment:
| Q |
23 |
ccacatgtaataccctgaattttgtgattttctcaaattatta---gcgtcagtgtgtcagtttcagtgtcggt |
93 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |
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| T |
23705475 |
ccacatgtaataccctgaattttgtgattttttcaaattattagcggcgtcggtgtgtcagtttcagtgtcggt |
23705548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 2424650 - 2424618
Alignment:
| Q |
37 |
ctgaattttgtgattttctcaaattattagcgt |
69 |
Q |
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| T |
2424650 |
ctgaattatgtgattttctcaaattattagcgt |
2424618 |
T |
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