View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_52 (Length: 336)
Name: NF8991_low_52
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 8443846 - 8444084
Alignment:
| Q |
13 |
ataattctcataacctccataaaaaagcttctttataaggtatctcnnnnnnnnctttcttggtacaatctttatggagaattttatgtaatcattatac |
112 |
Q |
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| T |
8443846 |
ataattctcataacctccataaaaaagcttctttataaggtatcccttttttttctttcttggtacaatctttatggagaattttatgtaatcattatac |
8443945 |
T |
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| Q |
113 |
tcgagttctagctgaactaaaaattttaaaataaaattgattattttttggtaatgggatannnnnnnaaggataaggggtcattgcttttctttaacaa |
212 |
Q |
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| T |
8443946 |
tcgagttctagctgaactaaaaaatttaaaataaaattgattattttttggtaatggaatatttttttaaggataaggggtcattgcttttct------- |
8444038 |
T |
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| Q |
213 |
ttaacaatgtacaaggaaggaagggataacatgagactttaatgta |
258 |
Q |
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| T |
8444039 |
ttaacaatgtacaaggaaggaagggataacatgagactttaatgta |
8444084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 8444109 - 8444150
Alignment:
| Q |
283 |
tgaattatatcaaaccaaaaagagatccaaaaatgcacaaag |
324 |
Q |
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| T |
8444109 |
tgaattatatgaaaccaaaaagagatccaaacatgcacaaag |
8444150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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