View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_6 (Length: 792)
Name: NF8991_low_6
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 684; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 13 - 775
Target Start/End: Complemental strand, 39560410 - 39559648
Alignment:
| Q |
13 |
tatacttatatgacttgtattcgaatgcaacatagaccaaggcataaccaacggttatataatgagtttagactaggatcttacaaattgctgagtaaat |
112 |
Q |
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| T |
39560410 |
tatacttatatgacttgtattcgaatgcaacatagaccaaggcataaccaacggttatataatgagtttagactaggatcttacaaattgctgagtaaat |
39560311 |
T |
|
| Q |
113 |
atatataacagaaaataacattaaagagtggcatgccaacacttttacccatccaatatagaaagccaaattaacctccattagagagcctcttgtaaag |
212 |
Q |
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| T |
39560310 |
atatataacagaaaata-cattaaagagtggcatgccaacacttttacccatccaatatagaaagccaaattaacctccattagagtgcctcttgtaaag |
39560212 |
T |
|
| Q |
213 |
aaagaactccaatttgattatacatgttacattaattatcctgcaaaaggagatatgatcatggcgacattagttgtttgttaggcatttcaatataccc |
312 |
Q |
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| T |
39560211 |
aaagaactccaatttgattatacatgttacattaattatcctgcaaaaggagatatgatcatggcgacattagttgtttgttaggcatttcaatataccc |
39560112 |
T |
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| Q |
313 |
actccattaactcctcactctccaacataaattgagctaatgtgcataatactctaaacatgtaataagatattgaagatttcttctccccaacgtattt |
412 |
Q |
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| T |
39560111 |
actccattaactcctcactctccaacataaattgagctaatgtgcataatactctaaacatgtaataagatattgaagatttcttctccccaacgtattt |
39560012 |
T |
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| Q |
413 |
tataaaacacgcgatttgtttggattacacttttcaagcttgcaagaaaacaaacgttttttacacatttgaattatgtaatccagagagatcgtgtgtt |
512 |
Q |
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| T |
39560011 |
tataaaacacgcgatttgtttggattacacttttcaagcttgcaagaaaacaaactttttttacacatttgaattatgtaatccagagagatcgtgtgtt |
39559912 |
T |
|
| Q |
513 |
tttagaaaagcatgtgcgtggggaagaaattatcttcttgagttcaagtcaagaatgaaataagagagatggcgaaaaaattaaccggccggaggaaaat |
612 |
Q |
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| T |
39559911 |
tttagaaaagcgtgtgcgtggggaagaaattatcttcttgagttcaagtcaagaatgaaataagagagatggcgaaaaaactaaccggccagaggaaaat |
39559812 |
T |
|
| Q |
613 |
cctacattt-nnnnnnnntatatcgttttttgcttcgacaaaccactttaagaactctaatggatatcccaacatttacatactccctcactcaaatttt |
711 |
Q |
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| T |
39559811 |
cctacatttaaaaaaaaatatcttgctttttgcttcgacaaaccactttaagaactctaatggatatcccaacatttacatactccctcactcaattttt |
39559712 |
T |
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| Q |
712 |
ttatttcttcaacggatttaatttgtatatatcaatagtgtaaaacttttttacacatgcattt |
775 |
Q |
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| T |
39559711 |
ttatttcttcaacggatttaatttgtatatatcaatagtgtaaaacttttttacacgtgcattt |
39559648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 726 - 764
Target Start/End: Complemental strand, 3214446 - 3214408
Alignment:
| Q |
726 |
gatttaatttgtatatatcaatagtgtaaaactttttta |
764 |
Q |
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| T |
3214446 |
gatttaatttgtatatatcaacagtgtaaaactttttta |
3214408 |
T |
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