View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_62 (Length: 274)
Name: NF8991_low_62
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 27294708 - 27294445
Alignment:
| Q |
1 |
cttcttgtgtttttctcaccttcaaatgatacaagagaaaatggtaaataatataagatgagtgatgaagaaaggtaagatgtttcaagaagttatttta |
100 |
Q |
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| T |
27294708 |
cttcttgtgtttttctcaccttcaactgatacaagagaaaatggtaaatgatataagatgagtgatgaagaaaggtaagatgtttcaagaagttatttta |
27294609 |
T |
|
| Q |
101 |
cactcgattatgatgccctgccaatagaaacacatcatttatctgggcattatgatcaagttcaaagcgaacgcttggtgttcatatccaccgtatcgta |
200 |
Q |
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| T |
27294608 |
cactcgattatgatgccctgccaatagaaatacgtcatttatctgggcattatgatcaagttcaaagcgaacgcttggtgttcatatccaccgtatcgta |
27294509 |
T |
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| Q |
201 |
gttctttgttgtattttacagcaaatgaactaaacacgtctatttatactagctgatgtccatc |
264 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
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| T |
27294508 |
gttctttgttgtattttacagcaaattaactaaacacgtctatttatactagcttatgtgcatc |
27294445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 32475094 - 32475142
Alignment:
| Q |
201 |
gttctttgttgtattttacagcaaatgaactaaacacgtctatttatac |
249 |
Q |
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| T |
32475094 |
gttctttgttgtgttttacattaaatgaaccaaacacgtctatttatac |
32475142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 13909471 - 13909423
Alignment:
| Q |
199 |
tagttctttgttgtattttacagcaaatgaactaaacacgtctatttat |
247 |
Q |
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| T |
13909471 |
tagttctttgttgtgttttacaacaaatgaaccgaacacgtctatttat |
13909423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 25880095 - 25880145
Alignment:
| Q |
199 |
tagttctttgttgtattttacagcaaatgaactaaacacgtctatttatac |
249 |
Q |
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|||||||||||||||||||||| ||||||||| ||||| || | ||||||| |
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| T |
25880095 |
tagttctttgttgtattttacaacaaatgaaccaaacatgtatctttatac |
25880145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 15247853 - 15247902
Alignment:
| Q |
199 |
tagttctttgttgtattttacagcaaatgaactaaacacgtctatttata |
248 |
Q |
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||||| |||| ||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
15247853 |
tagttttttgctgtattttacagcaaatgaaccaaacatgtctacttata |
15247902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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